Poeciliopsis prolifica (blackstripe livebearer): 129378979
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Entry
129378979 CDS
T09758
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03018
RNA degradation
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129378979 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
129378979 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129378979 (lsm5)
03041 Spliceosome [BR:
pprl03041
]
129378979 (lsm5)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129378979 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
129378979 (lsm5)
Spliceosome [BR:
pprl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129378979 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
129378979
NCBI-ProteinID:
XP_054915464
LinkDB
All DBs
Position
Unknown
AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacaccagcaacgaatccttcacagttgctcccactcgagcttgtggataaa
tgtatcggctccaggatacacatagtgatgaaaacagacaaagaaatcgtcggcacgctg
ctcggcttcgatgacttcgtcaacatggtgctggaggatgtcaccgaatttgagatcacc
ccagagggaaggaggataaccaaactggatcagatcctcctgaatgggaacaacatcacc
atgctcatccctggaggagaaggacccgaggtgtga
DBGET
integrated database retrieval system
