Poeciliopsis prolifica (blackstripe livebearer): 129379207
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Entry
129379207 CDS
T09758
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129379207 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129379207 (sf3b1)
03036 Chromosome and associated proteins [BR:
pprl03036
]
129379207 (sf3b1)
Spliceosome [BR:
pprl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129379207 (sf3b1)
Complex B
129379207 (sf3b1)
Complex C
U2 SnRNP specific factors
129379207 (sf3b1)
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
129379207 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
129379207
NCBI-ProteinID:
XP_054915840
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLQEENGEQGVGLVSTGFYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEDDTSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKIADREDE
YKARRRHMIISPERLDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRLQLAEKAKS
GDLKAVNGSAASQAAAKRKRRWDQTADQTPSNSTPKKLSSWDQADAAAETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHTTPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcccagatcctggagatccagggg
atgaaggccaccctgcaggaggagaatggagagcagggcgtgggtctggtctccactggc
ttctacgaccaggagatctatggcggcagcgacagccgctttgctggatatgtcacttca
atcgcagccaatgagcaggaggatgacgatgaagacgacacgtccactagcctactgggg
cagaagaaacctggctaccacgcgccagtggcaatactcaactccatccctcagtcagat
gagcagtacgacccgttcgcagaacatcgtccgcagaagatcgccgatcgggaggacgaa
tacaaagcccgccgcagacatatgatcatctcgcccgagcgtctcgacccttttgctgac
gggggcaaaacaccggaccccaagctgcaggtcagatcgtatgtggacgtgatgatggaa
cagaacctgtccaaagaggagagggagattcgtctgcagctggcagagaaggccaagtcg
ggggatctgaaagcggtcaatgggtctgctgcctcccaagctgctgccaaacgaaagcgc
cgctgggaccagacagctgaccaaactccatccaactccacacccaaaaaactgtccagc
tgggaccaggcagacgccgcggctgagactccaggacacactcctgcacacacaccttcc
aacagccgctgggacgaaactcctggccgcccgaagggcagtgagaccccaggggccacg
cccagcacccgtatgtgggaccccacccccagccacaccccagccggcgccgccacgcct
gggcgagatacaccagggcacactacgcccggccacggtggcgccacggggagtgtccgc
aagaaccgctgggacgagaccccaaagacagagcgcgagacgccgggacacggcagcggc
tgggctgagacgccgcgcacggacagaggggaggagtcggtgggggagaccccgacccct
ggagccagcaagaggaagtctcggtgggatgaaacacctgccagccaaatgggctcctct
acaccgctgctgacccctggaaaaactccattaggaacgccagccatgaacatggccaca
cctacacccggacacctgatgagcatgacccctgagcagctccaggcctggaggtgggaa
cgggagattgatgagaggaaccgacctctgaccgacgaagagctggacgccatgttccca
gaaggatacaaggtgttgcctcctccagcgggttacgtaccgatccgtactccggcccgt
aagctgtcagccactcccaccccaatcggaggcatgacgggcttccacatgcaggcagag
gaccggaccaccaagcagatgaatgaccagccctcaggaaacctcccattcctcaaacct
gatgacattcagtactttgacaaactgctggtggaggtggacgaatcaactctgagcccc
gaggaacagaaggaaaggaagatcatgaagctgctgctgaagattaagaatggaactcca
cccatgagaaaggccgctctgcgccagataacagacaaagctcgagagtttggagcaggt
cccctcttcaaccagattctgccgctgctcatgtcccccaccctggaagaccaggagcgc
catctgctggtcaaggtcatcgaccgcatcctctacaaactggacgacctggtccggccg
tatgtacacaagatcctggtggtgatcgagccgctgctgatcgatgaggactactacgcc
agagttgaaggcagagaaatcatctccaacttggcaaaggctgccgggttggccacgatg
atctctacgatgcgacccgatatcgacaacatggacgagtacgtcagaaacacgaccgct
cgagccttcgccgtggtggcgtccgccctgggtattccctcgctcctccccttcctcaaa
gccgtgtgcaaaagcaagaaatcgtggcaggccagacacacaggcatcaagatcgtgcag
cagatcgccatcctgatgggctgcgccatcctgcctcacctgcgcagcttggtggagatc
attgaacacggtctggtggacgagcagcagaaggtgaggaccatcagcgctctggccata
gctgccctggccgaggccgccactccctacggaatcgagtcgtttgactctgtgctgaag
ccgctgtggaagggcatccggcagcacagaggaaagggtctggctgcgttcctcaaagct
attggctacttgatccccctgatggatgccgaatacgcaaactactacaccagggaggtg
atgctgattctcatcagagagttccagtctcctgatgaggagatgaagaagattgtgctg
aaggtggtgaagcagtgttgtggcacggatggtgtggaagcaaactacatcaaaactgag
atcctgcccccgttcttcaagcacttctggcagcacaggatggctctggacagacgcaac
tacagacagctggtggacaccaccgtggagctggctaacaaagtgggagctgccgagatc
atttcccgtattgttgacgacctgaaagacgaggcggagcagtacaggaagatggtgatg
gagaccatcgagaagatcatggggaacctgggagccgctgacattgaccacaagctggag
gagcagctgatcgacggcatcctgtacgccttccaggagcagactacagaggattctgtt
atgctgaatgggtttggtacagtggtgaacgcactggggaagcgtgtgaagccatacctg
cctcagatctgcggtacggtcctgtggcgtctcaacaacaagtcagccaaagtccgccag
caggcggccgacctcatttcccgcacggcggtggtgatgaaaacctgtcaggaggagaag
ctgatgggtcacttgggtgtggttctgtacgagtacctgggagaggagtaccccgaggtc
ctgggcagcatcctgggagcgctgaaggccattgttaatgtcatagggatgcacaagatg
actccaccaattaaagacctgcttcctcgtttgacacccatcctgaagaatcggcatgag
aaggttcaggagaactgcatcgacctggtgggccgaatcgctgataggggtgctgagtac
gtgtcagccagagagtggatgaggatttgctttgagttgctggagttgctcaaagctcac
aaaaaggcaattcgcagagctaccgtcaacacgtttggttatattgccaaagccatcggg
cctcatgacgtgttggccactctgctgaacaacctgaaggtccaggagcgtcagaaccgc
gtgtgtacaaccgtggccattgccatcgtggcggagacctgttcaccgttcacggtgctg
ccggcactcatgaacgaatacagagtgcctgagctgaacgtgcagaacggtgtcctgaag
tcgctctcgttcctgttcgagtacatcggagaaatgggaaaagactacatctacgctgtc
acacctctgctggaggacgcattaatggacagagatttggtccacagacagaccgccagc
gctgtcgtccagcacatgtctctgggtgtctacggttttggctgtgaagactccctcaac
catttactgaattacgtgtggcccaacgtttttgagacgtctccccacgtcatccaggct
gttatgggcgccctggaggggctgagagtggccctcggcccctgccgcatgctgcagtac
tgcttacagggtctgttccatccggcccggaaggtgagagacgtctattggaagatttac
aactccatctacattggttcccaggacgccctgattgctcattacccacaggtctacaac
gatgagaagaacgtctacgtccgctatgagctcgaatacgttttgtaa
DBGET
integrated database retrieval system
