KEGG   Poeciliopsis prolifica (blackstripe livebearer): 129379329
Entry
129379329         CDS       T09758                                 
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A isoform X1
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
pprl  Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129379329 (prpf38a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pprl03041]
    129379329 (prpf38a)
Spliceosome [BR:pprl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    129379329 (prpf38a)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    129379329 (prpf38a)
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 129379329
NCBI-ProteinID: XP_054916028
LinkDB
Position
Unknown
AA seq 310 aa
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERVCDIILPRLQKRQVLEEAEMLDPR
VSALEEDLDEVESSEEEDEEEEKFERPPSPEPHRRGHRDNDRPRRSPSPRYRRSRSPRRR
SRSPKRRSSPSPRRERHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKTPERSSKK
SHKKSRRGND
NT seq 933 nt   +upstreamnt  +downstreamnt
atggcaaacagaaccgttaaagatgcaaacagcatccacggaaccaacccgcagtacctg
gtggagaaaatcatccggacccgaatctatgagtccaaatactggaaggaggaatgtttc
ggcctgaccgcggagctggtggtggacaaagccatggagctgaagtttgtgggaggagtt
tatggcgggaacatcaagccgactccgttcctctgcctcacgctgaagatgctccagatc
cagccggagaaagacatcatcgtggagttcatcaaaaacgaggattttaaatacgttcgt
ctgctgggagccatgtatatgaggctgaccggcaccgccgtggactgctacaagtacctg
gagccgctctacaacgactacaggaagatcaagagtcagaaccggaacggagagtttgag
ctgatgcatgttgacgagttcatcgatgagctgctccacgcagagagagtgtgtgacatc
atcctgccgcggcttcagaagaggcaggttctggaggaagccgagatgctggacccgcgg
gtcagcgctctggaggaagacctggacgaggtggagagcagcgaggaagaggacgaggaa
gaggagaagttcgagcggccgccgagcccggagccccacagacgtggtcaccgagacaac
gaccggcctcgccgctcgccgtcgcctcgctacagacgcagccgctctcctcgccggcgg
agccgatcgcccaagagacggagcagcccgtcgcctcgcagagagcgtcaccgcagcaag
agcccgcggcgccaccgcagccgctccagggaccggcggcaccgctccaaatcgcccggt
caccacagaagccacagacatcggagccactccaaaaccccggagcgaagctccaaaaag
agccacaagaagagccggagaggaaacgactga

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