Poeciliopsis prolifica (blackstripe livebearer): 129379793
Help
Entry
129379793 CDS
T09758
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129379793 (ythdc2)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129379793 (ythdc2)
Spliceosome [BR:
pprl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129379793 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
ATPase
nSTAND3
Ank
PhoH
AAA_22
Ank_5
SRP54
AAA_30
Ank_4
AAA_7
CdiI_N
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
129379793
NCBI-ProteinID:
XP_054916648
LinkDB
All DBs
Position
Unknown
AA seq
1399 aa
AA seq
DB search
MFNAMGTSQKASRRQNMSPQGSSSSDSKTIHIGEEVKIAVNLSLERFRYSDEKEMEFPSS
LSNTERAFIHRLAQSLGYISKSKGKGSSRFLTVRKRDVSDKPRPSTSLDLCPSSLYFIRS
LLQRFPTSKKERADMHPNIKSGMSLATETNSGFDRNRASGRLNNGIPMVPRKRAPSELDI
FRSSLPVHEHQEEIVRLIRENRVVLVLGETGSGKTTQIPQFLLDDCSRNGKPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDTSLT
TVTHVIVDEVHERDGLTDFLLTKMRDVVQRIPTLKLILSSAALDIDLFLHYFGSCPVIHL
KGKQFEVKELFLEDILRQTGFNRKDIWKYQEETQRKEGKQKRLTEWCETVESSSVGGKRT
HMLAPGFLHAASCGDREDEGSIKLNENDTEQLEPWLLREMDSCISSIFLHEDQEAFSQLF
NLILNESVPVDFMHSETGSTALMVSAARGFLPQTQQLLSMGADINIKASNGWTALDFAKH
FQQSEAMDILKSSIPLGEVSSLEESALVQSSPTELSSEEQELLKQYHHSFDDQRVDLDLI
MTLLHNICTTTNEGAVLVFLPGYDEIVSLRDRILFDDKRFSTHSESYQVFTLHSDMQTLD
QKRAMKPAPSGVQKIILSTNIAETSITIDDVVFVIDSGKIKEKSFDTLSRVSMLKTVWIS
KASVLQRKGRAGRCRPGVCFHLFSRLRFNNMQEFQVPQLLRMPLQELCLQTKLLAPSSCP
VAEFLSKAPQPPPTHAIQSAVQMLKTIDALDQNEDLTDLGFHLADLPVEPHLGKMVLCAV
VLKCLDPILTIACTLAYRDPFTLPAESSQKRAALQSRKRFTSNTFSDHMALLRAFQAWQK
ARSEGWERSFCERNFLSQSTMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWA
VVKAALVAGMYPNMVHVNKKTSLLSSNREKKVHFHPTSVLSQLQLKENNSSKLGQTLPTD
WLIYDEMSRGHRMASVRCCSVVTSITVAMFGGGTKLLSSTLHESAVQKRNENPLDDMSDS
DTEDLVEIKIDDWLVFGLERETAALVSELRQKWQNLFIKRIRCPSKPWSQQDEAVIQTLV
SVLGAEEQEAGLQQPTGIGQRPRPMTSEDGPRSSGRNSKASPQLPSHNTNDKPRRMLSSD
LLKTNSHSRDEVSLAIKKLWDYPSSSSSSSCSVTLDGPPESPSGKLVLKSVSQKPTVSSV
RYFIMKSNSIRNIEISQQKGIWSTTPNNETKLTQAFLANSFIILIFSVQGSGHFQGYARM
TSVVSQESCQDWGFMGLGGVFSVEWIHKESLPFPFTQHILNPWNDNKRVQVSRDGQELEP
QAGSQLLSLWERNSGNQLH
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgctatggggacatcacaaaaagcgtccagacgtcaaaacatgtcacctcaa
ggctccagttccagtgactcaaaaacaattcacattggtgaagaagtcaagatagcagtg
aacctctctttggagaggtttcgttatagtgatgaaaaagagatggaattcccatcctca
ctgtccaacactgagcgagcctttattcatcgactggcccagtccctgggctacatttcc
aaaagcaaaggaaaaggctccagtcgttttctgacagtcaggaagagagatgtttcagac
aaacctcggcccagtacatctcttgatctgtgccccagctccttatatttcatccgcagc
ctgctgcagagatttcccaccagcaagaaggaacgtgcagacatgcatcccaacatcaaa
agtggcatgtctctggctacagaaactaacagcggctttgacaggaacagagcaagtggg
cgcctaaacaatggcattcctatggttcctaggaagagggcgccatcagaactggacatt
ttccgaagctccctgcctgtacatgagcaccaggaggagattgtcagactgatcagagaa
aacagagtagtacttgttttgggagagactggctctggaaaaactacacagattccccag
tttttgttagatgattgtagcagaaatggaaaaccctgcaggattttctgtactcagccc
aggcgcctggctgccatcgctgtggctgagagagttgcagccgagagaggggagagtgtt
ggccagacagttggttatcacatcagactggaaagcagggtctcgcccaagacactgcta
accttctgcacaagtggagtcctcctcagaacactgatggctggggataccagcctcaca
accgtcacccatgtcattgtggatgaggttcacgagcgcgatggcctgactgacttcctt
cttactaagatgcgggatgttgtccagaggattcccacactgaagctgattctctctagt
gcagctctggatatagacctattcctccattactttggctcctgccctgtgatccacctt
aaagggaaacaatttgaagtgaaagagctctttctggaagatatcctgaggcagacgggc
tttaatagaaaggacatctggaaatatcaggaagagactcagagaaaagaggggaagcag
aaacgattgacagagtggtgtgagacggtggagagcagttctgttggtgggaaacggacc
cacatgttggctccaggcttccttcatgctgccagctgtggggacagagaagatgagggc
tccatcaaactgaacgaaaatgacacagagcagcttgaaccgtggctgctgcgggagatg
gactcctgcatttccagcattttcctacatgaagaccaggaggctttcagtcaactcttc
aacctcattctaaatgaaagcgtccctgtggacttcatgcacagtgagaccggctccacg
gctctgatggtgtcagcagcgcggggattccttccacaaacgcagcagctgctcagtatg
ggtgctgatatcaacataaaggcttctaacggatggactgccttagattttgctaaacac
ttccagcagtcagaagcaatggatatcctcaagtcttcaatacctttgggggaagtgagc
agcctggaggaatcagcattggtacagagcagtcctacagagctgagcagtgaagaacaa
gagcttctcaaacagtaccatcacagctttgatgaccagcgggtggacctggatctcatt
atgacattgctccataacatctgtaccaccactaatgagggtgctgtcctcgtatttctt
cctggatatgatgaaattgtgtcattgagggatcgcatcctctttgatgataagaggttc
tccactcactccgagagttaccaggttttcactctgcattctgacatgcagactctggat
cagaaaagagccatgaagccagcgccatctggtgtccagaagataattctttctactaac
attgctgaaacaagcattactattgatgatgtggtcttcgttattgattcaggaaagatc
aaagagaagtcctttgatacgctgagtcgggtttctatgttaaagactgtttggatctca
aaagccagtgttttgcaaagaaaaggaagagctggtcgctgtagacctggggtttgcttc
catctcttcagtcgtctcagattcaacaatatgcaagagttccaggttccacagctgctg
cgaatgccactgcaggaattgtgtctacagaccaagctgttggctccttcatcctgcccc
gttgctgagttcttatctaaagcgccacagccacctcccacacatgcaatccagagtgct
gtacagatgttaaagacaatagatgctctggaccagaatgaagacttaaccgacctgggc
ttccacctggctgatttacctgtggagccccacctggggaaaatggtgttgtgcgctgtt
gtgctcaagtgtctggaccccattctcaccattgcctgtactctggcctatcgtgaccct
ttcacccttcctgctgaaagctcccagaagagagctgctctgcagagccgcaaacgtttc
acgtccaacaccttcagtgaccacatggccctgctcagagctttccaggcatggcagaaa
gcccgcagtgaaggctgggagagatcattctgtgaaaggaacttcctgtcccagtctacc
atggacatgattcttggcatgaggacacaacttttagggcaacttcgtgctattggtttt
gtgcgcgcccgtgggggcagcgatatccgtgatgttaatctgaattctgaaaactgggct
gtcgtgaaagcagccctggtggctggaatgtatccaaacatggttcatgtcaacaagaag
acctccctgctctccagtaacagagagaagaaggttcattttcatcctacatcagtcctg
agccagctgcagttgaaggagaacaacagctccaaattaggtcagaccctccccacagac
tggttgatctatgatgagatgagcagaggtcacaggatggccagtgttcgctgttgctcc
gtggtgacctccatcacagtggccatgtttggaggtggtaccaaacttcttagctccaca
ctccatgaaagtgctgtacagaaaagaaatgaaaatcctctggatgacatgagtgacagt
gacacagaagatttagtggagataaagattgacgactggcttgtcttcgggctcgagaga
gagactgcagcactggtatctgaactcagacagaagtggcagaacctgtttataaagagg
atccgctgtccttccaaaccctggtctcagcaggacgaggcagtcatccagaccttagtg
tctgtgctaggtgctgaggagcaggaagctggcctgcagcagcctacagggattggtcag
aggcctaggcctatgacatcagaggatgggccaaggtcatcagggaggaactccaaggcc
agcccccagctgccctctcacaacacaaatgacaagcctcgtcgaatgctgtcttctgac
ctgctgaagactaactcccacagcagagatgaagtctcactggccatcaagaagctgtgg
gattatccgtcttcctccagtagttcttcctgctctgttactctggatgggccccccgag
tctccctcaggaaagctggtcttaaagtctgtgtctcagaagcctactgtgtcatcagtc
cgatacttcattatgaagagcaacagcatcagaaacatagagatttctcagcagaaaggc
atctggtctactacaccaaacaacgagaccaaactcacccaagctttcctggcaaatagc
ttcataattctcatcttctctgtccagggatctggacacttccagggttacgctcgcatg
acatctgtcgtcagccaggagagctgccaggactggggcttcatggggctcggaggagtt
ttcagtgtagagtggatccataaagagagtcttcccttccccttcacccagcacatcctc
aacccatggaatgacaacaagagagttcaagtcagcagggatggacaggagttggagccc
caggctggcagccagttgctgtctctgtgggagaggaattctgggaatcagcttcactaa
DBGET
integrated database retrieval system
