Poeciliopsis prolifica (blackstripe livebearer): 129379998
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Entry
129379998 CDS
T09758
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129379998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprl03041
]
129379998
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129379998
Spliceosome [BR:
pprl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129379998
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
129379998
NCBI-ProteinID:
XP_054916938
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MDIVKKPLKKLTRDGPAGAGVNDRLHDILGLSDRYVSQFMIGIARKASSPEDLVSRLEQT
GTIDIDQSVSAFAKELFEKIPRQQVIEKPSKALERQAIEMDRKNRTYTLLEDSNSDEEAA
ADKQRGKKKDKDRGGKRKNIRQKKASESSSDDETPKRGGSVLEDHRSLKKEEEEEWEKEE
RERLLDIEERDAFAQRVRQKDKEKTRNIAERTDKKAYEEAQKRLKMAEDDQKNMLPELRK
RSRWEYLKKREEEKLEDLEAEIIDDEYLFSKEELTERERRELEYKRTLRDLAKDYKQAGA
KEQEERKNRYYMPEERRSKDVPQRDLELDEAPMELGGEQGRWEEERLKTASLSFGARKER
ELGLKQEQDRYQLVLEEEEMIDFVSTAITMKGTRSDKDEAEPALSQAELKKRSMQEVRRS
LPIFPYREDLLAAITEHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAA
MSVAARVAEEMSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVII
IDEAHERTLHTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFP
VDIFYTKAPEADYLDACVVSVLQIHVTQAPGDILVFLTGQEEIEACCEMLQERCRRLGSK
IAELVVLPIYANLPSDMQAKIFSPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQK
SYNARTGMESLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTIPEIQRT
NLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAEL
PVDPMLSKMILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDH
LVLLNVYTQWVESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMERIEVEVVSCSGDNVP
IRKAVTAGYFYHTARLSKGGYRSVKHQQTVFVHPNSSLFEEQPRWLIYHELVFTTKEFMR
QVIEIDSGWLLEVAPHYYKSKELEDSSSKKMPRKQGKAREELG
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgttaaaaagccactgaaaaagctaacgcgcgatggcccagctggagcaggg
gtgaacgaccgtctccatgacatcctcggcctgagcgacagatacgtctcccagttcatg
atcggcatcgctcgcaaagcgtccagcccggaggacctggtgagccgcctggagcagacg
ggaacaatcgacatcgaccagagcgtctctgccttcgcaaaggaactgtttgaaaaaatt
ccccgtcagcaggttattgagaagccttccaaagccctggagcgccaggccatagagatg
gacaggaagaaccggacctacacgctgctggaggacagcaacagcgacgaagaggcggcg
gcagacaaacagagaggcaagaagaaagacaaggacagaggaggcaagaggaagaacatc
agacagaaaaaagccagcgagtcgtcgagcgatgatgaaacgccaaagaggggaggttct
gtcctggaggaccacagatctctgaagaaagaagaagaagaggagtgggagaaggaggag
agggagcgactgctggacatcgaggagagagacgccttcgcccagagagtcaggcagaaa
gacaaagaaaagacgcggaacatcgccgagcggacggataaaaaggcctatgaagaagct
cagaaacgactgaagatggctgaagatgatcagaagaacatgttgccggagctgaggaag
cgttcccgttgggaatatctgaagaaaagagaggaggagaagctggaggacctggaggcg
gagatcatagacgacgagtatctgttctccaaggaggagctgacggagcgcgagaggcgg
gagctggagtacaagcggaccctccgggacctggccaaggactacaagcaggccggggcc
aaggagcaggaggagaggaagaaccgctactacatgcctgaggagaggaggagcaaggac
gtcccccagagggatctggagctggacgaggcccccatggagctgggaggggagcagggc
cgctgggaggaagagcggctgaagacggcctctctcagcttcggagccaggaaggagcgc
gagctgggcctgaagcaggagcaggaccggtaccagctggttctggaggaggaggagatg
attgactttgtcagcacggccatcaccatgaaggggacgcgctccgacaaggacgaggcg
gagccggcgctgtcgcaggccgagctgaagaagcgctccatgcaggaggtgcggcgcagc
ctgcccatcttcccctacagggaggacctgctggccgccatcaccgagcaccagatcctg
gtcatagagggcgagacgggctccgggaagaccacccagatcccacagtacctgctggag
gacggctacaccaaaggagggatgaagatcggctgcacgcagccccgcagggtggcggcc
atgtctgtggcggcccgcgttgccgaggagatgagcgtgaagctggggaacgaggtgggg
tacagcatccgcttcgaggactgcacgtctgaacgcaccgtgctgaagtacatgacggac
gggatgctgctccgagagttcctgactgaacccgacctggccagctacagtgtgatcatc
atcgacgaggcccatgagcgaacgctccacaccgacatcctgttcggtctcatcaaagac
atcgctcggttccgacccgacctgaaggttctggtggctagcgccacgctggacacggag
cgattttcctgcttcttcgacgacgctccggtgttcaggattcccggcaggagattcccc
gtcgacattttctacacgaaagctccggaggcggattacctggatgcttgtgtggtttca
gtgctgcagattcacgtcacccaggctcccggggacatcctggtcttcctcaccggacag
gaggagatcgaagcgtgctgcgagatgctgcaggagagatgcaggcgtctggggtcaaag
atcgctgagctggtggttctgcccatctatgccaacctgccgtctgacatgcaggccaag
atcttcagcccgactcctcctggagcccggaaggtggtggtggccaccaacatcgcagaa
acgtctctgaccatagacgggatcatctacgtcatcgaccccggcttctgcaaacagaag
agctacaacgcgcgcacgggcatggagtcgctcatcgtcacgccttgctccagggcttca
gccaatcagagagcaggacgggcgggcagagtggctgctgggaaatgtttccgcctctac
acggcctgggccttcaagcacgagatggaggagacgacgatccctgagatccagaggacc
aacctggggaacgtggtgctgctgctgaagagcttaggaatcaacgacctgattcacttt
gacttcatggacccgccgccccatgagaccctggttctggccctggagcagctgtacgcg
ctgggagccctcaaccacctgggggagctcaccaagctgggtcgcaggatggccgagtta
ccggtggatcccatgctgagtaaaatgatcctggcctcagagcagtacaagtgttcagag
gaagtgctgaccatcgccgccatgctgtcggtgaacaactccatcttctaccggcccaaa
gacaaggtggtgcacgccgacaacgccaggatgaacttcgtggttccgggcggagaccac
ctggtgctgctcaacgtctacacacagtgggtggagagcggctactccacccagtggtgc
tacgagaacttcatccagttccgctccatgaggcgagcccgggacgtccgggaccagctg
gagggtctgatggagcgcatcgaggtggaggtggtcagctgcagcggggacaacgtcccc
atccgtaaggcggtgacggccgggtacttctaccacacggcgcggctcagtaagggcggc
taccggtcggtgaagcaccagcagacggtgttcgtccatcccaacagctcgctgttcgag
gagcagccgcgctggctcatctaccacgaactggtcttcaccaccaaggagttcatgaga
caggtgatagagatcgacagcggctggctgctggaggtggcgcctcactactacaagagc
aaagagctggaggacagcagcagcaagaagatgccccggaagcagggcaaggcccgggag
gagctgggctga
DBGET
integrated database retrieval system
