Pimephales promelas (fathead minnow): 120459790
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Entry
120459790 CDS
T08155
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120459790 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120459790 (prpf40a)
Spliceosome [BR:
pprm03041
]
Complex A
U1 snRNP components
U1 related factors
120459790 (prpf40a)
Complex B
120459790 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
PTPlike_phytase
Motif
Other DBs
NCBI-GeneID:
120459790
NCBI-ProteinID:
XP_039503162
LinkDB
All DBs
Position
Unknown
AA seq
878 aa
AA seq
DB search
MSSTDANSGPSHAPPFPGVPPSGIPLPFMGPPGIPPHFPPMGMPPMGQRPPSMAPMPPGI
MPPMMPPMGAPPMGQMPAMMPPMIPGMMMPPRMPAATIQPTGPPGVSPVEPAVPAAPGTT
STTSTESSPDEQTKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPW
KEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADVVAPGTTPVLPSQIEP
PVTVAAVAETEVAMATGISEEPPSHVPAQVAEVSSDVIVNSTEEMPSVETQPSNDVSKEE
RPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQ
AFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFADQEVWSCV
PERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLD
NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLD
ELHDHGQLHSMSAWMEMYPTVSADIRFNNMLGQPGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGFLVEINTGFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKSMLKQATPPLEPEATWEGVRERFLKEPAFEDITLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKKKKRSTSKSPSEHTSSG
DSERSYKKSKKHKKKGKKRRHKSASPESEGEKERKGREKEKDKENDKSRVKSRGESKQKS
PKRKSAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaactgatgctaatagtggccccagtcatgcaccaccttttcctggtgttcca
ccttcaggaatccccctgccctttatggggccaccaggaatcccgcctcacttccctccg
atgggaatgccacccatgggtcagaggccacccagcatggcgcccatgcccccgggaata
atgccccccatgatgcccccaatgggagctccacccatgggacagatgccagccatgatg
ccaccaatgataccaggaatgatgatgcctccccggatgccagctgcaacaatccagcct
acaggaccgcctggtgtgagtccagttgagcctgcagtgccagctgctcccggaacaacg
agcaccacatcaaccgagtcttcacctgatgaacagacgaaaaaaaagtcggtatggacc
gagcacaaatcactggatggaaaaacatattactacaacacagagaccaaacaatccacc
tgggagaaaccagatgaactcaaatcacctgcagagcaaatgttgtcgaagtgcccgtgg
aaagaatacaagtcagacaccggaaagccctattactacaactcacagaccaaagagtct
cgctggactaaacccaaagaactggaggacctggaggcgatgataaaggcagaggaaaat
gggacggctgatgttgtggctcctggcaccacccctgttcttccatctcagatcgagcct
cctgttactgtggcggcagttgctgagacagaagttgccatggcgacgggcatctcagag
gaaccgccgtctcacgtgcccgctcaggttgctgaggtcagcagtgatgtcatcgttaac
tccactgaggaaatgcccagcgtagagacacaacccagtaatgatgtttctaaggaggag
agacctgagctggtgaagaaagtttacaagtggaatacgaaagaggaggcaaagcaggcc
ttcaaagaactgttgaaagaaaagggtgtttcctccaatgcttcatgggagcaggcaatg
aagctgataattaatgaccctcgttacagtgctctgcccaagctgagtgaaaagaaacag
gcgttcaatgcttataaagtccagacagagaaagaagaaaaagaagaggccagaatcaaa
tacaaggagtctaaagagacgttccagcgctttctggagaaccatgagaagatgacttca
accacacgatacaagaaagcggaacagatgtttgccgatcaggaagtgtggtcatgtgtt
cctgagagagacaggctagagatctatgaagatgtgctcttctatctggctaagaaagag
aaggaacaagccaagcagctcaggaagaggaactgggaggcgctgaagaacattttggac
aatatggccaatgtgacatacagaacaacatggtctgaggcacagcagtaccttctggac
aaccccacttttgctgaagatgaggagctacagaacatggacaaggaggatgcgttgatc
tgctttgaggaacacatccgtgctcttgagaaagaggaggaggatgagaagcagaaaact
cttctgcgagaaagacgcagacaacgcaagaacagagagtccttccagaaattcctggat
gagcttcacgatcatgggcagctgcactccatgtctgcctggatggagatgtacccgacc
gtcagcgctgatatccgcttcaacaacatgctgggccagccaggctccactcctctggac
ttattcaagttttacgtggaggatctgaaagctcgttaccatgacgagaagagaatcatt
aaagacatcctgaaggataagggcttcctggtggagatcaacacaggctttgaggatttt
ggctcagtgatcagttctgataaacgcgccaccacgctggatgcaggaaacatcaaactg
gccttcaacagtttgctggagaaggctgaagcacgtgagagggagagagagaaagaggag
gccaggaagatgaagaggaaggaggcggcgtttaagagcatgctgaaacaggccacgccc
cctctagagcccgaggccacgtgggagggggtacgagagcgtttcctaaaagaacctgcg
tttgaggacatcactctggagtctgagaggaagaggatattcaaagacttcatgcatgta
ctagagcatgaatgtcagcatcatcactcaaagactaaaaaacactccaagaaatccaag
aaacaccacagaaaacgttcccgatctcgatcaggctcggagtcagaggatgatgagtat
cactcgaagaagaagaaacgttcgacgtctaaatctccgtctgaacacacttcctctggg
gattctgagagaagttacaagaaatctaagaaacacaagaagaagggaaagaaaagacga
cacaaatcagcctcccctgagtctgaaggagagaaagagcggaaagggcgagagaaggag
aaggataaagagaacgacaagtccagagtgaaatcacgtggagaatccaaacagaaatcc
cccaaaagaaagagtgcaaaagaagagggtggatgggatacgtctggcagtgaactgagt
gaaggagagctggagaagaggaggcgcactctcctggagcagctcgacgcaccataa
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