Pimephales promelas (fathead minnow): 120459947
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Entry
120459947 CDS
T08155
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120459947 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120459947 (ddx6)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120459947 (ddx6)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120459947 (ddx6)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120459947 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
120459947 (ddx6)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120459947 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120459947
NCBI-ProteinID:
XP_039503408
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGGSQTMQPTQVKASSTVNNGNSQPV
PTANTIIKPGDDWKKNLKLPPKDMRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMVVLDEADKLLSQDFVQMMEEMLSSLPKQRQILLYSATFPLSVQKFMNTHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctgggactgtcgaatcagaatggccaa
atgcgaggctctgtgaagccagcagggggtcctggaggaggtggaggggggtcccaaaca
atgcaacctacccaggtcaaagcctccagcacagtcaacaatggcaactcccagcctgta
cccaccgccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcct
ccgaaggatatgcgcatgagaacttcagatgtgacggcgaccaagggaaacgaatttgag
gattactgcctgaaacgggagttgcttatgggcatctttgaaatgggctgggagaaacca
tcacctatacaggaggagagcattcccattgcattatctgggagggacatcctagccaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcattggtcattgtgcccactagagaactggctctacaa
gtcagccagatctgcatccaggtcagcaaacacatgggcggggtcaaggttatggcaact
acaggtggaaccaacctccgtgatgacatcatgagactcgacgaaacggtgcatgttgtc
atcgccactccaggaagaattttggacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatggttgtgttggatgaggcagataagctcctttcgcaggactttgtacagatg
atggaggagatgctgagctctttgcccaaacaaaggcaaattttgctgtactctgccaca
ttcccactgagtgtgcaaaagttcatgaacacccatctgcagaagccctatgagataaac
ctgatggaggagctgaccctgaaaggggttactcagtattacgcctatgtgactgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcccagcgagtggagctcctggccaagaagatctcgcagcttgggtac
tcctgtttctacattcatgccaagatgagacaggaacaccgaaaccgcgtgttccacgat
ttcagaaatggcttatgtcgaaatctcgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaacttcgatttccccaaactcggggagacgtacctc
catcgcattggcagatctggccgatttggacacttgggtctggccattaacttgatcact
tatgatgaccgctttaacctgaaaggtattgaagaacagctgggtactgaaatcaagccc
attcccagcagtattgacaagagtttatatgtggccgagtaccatagtgagagtggggag
gaggttaaactgtga
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