Pimephales promelas (fathead minnow): 120460334
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Entry
120460334 CDS
T08155
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04350
TGF-beta signaling pathway
pprm04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120460334
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120460334
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120460334
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
DCC/UNC5 family
120460334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Neogenin_C
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
V-set
Fn3_VIN3
Interfer-bind
fn3_SORL1
fn3_2
NDNF
Unc5_NetrinR_N
Sp38
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
120460334
NCBI-ProteinID:
XP_039503995
LinkDB
All DBs
Position
Unknown
AA seq
1428 aa
AA seq
DB search
MAERGARLLVFFTSLIVLRFGGADKGSAIQEFTPFRFSVEPVDTLAVRGLPAVLNCSAAS
AAPVRVEWKKDGTFLNLVADDRKRQLADGSLLISTVVHNKHNKPDEGVYQCVASIDNLGT
ISSRTARLTVAGLPRFLSQPEGVSVRMGGSEMLSCEVMEELVPFTRWERDGRPVELDARV
IQLPSGALVISNASQTDAGLYRCTIDALGPPKTTEEAELQVSADSGVEEKLETLQGPVSV
AKVVGESVLLPCVMKGYPVPVIRWTFNDRSIDEGHERFTVIGGGSLQIVNLTEEDAGIYV
CQADGGNMTSEIQAELTVHVPPRFVTRPSNTYAQESMDIIFECDITGSPPPTVRWMKDGD
TVIPSDYFRIVKQHNLQVLGLVKSDEGFYQCLAENDAGNVQASAQLIILDLDVALPSTVP
SLTDATTDHVASSPAERSGPAPSAPRDVVASLVSTRFIKLTWRQPAEPHGENITYSVFYS
LDGTNRERVENTSGPGEMQVTIQNLVPDTKYTFRVVASNANGPGESSAPLTVATQLEVQV
PGPAPNLQVVSVGPASVALSWERPVNGNGDIQTYKLFYSEKGQDSEQDMDVTGLSYTMTG
LKKFTEYSFRVVAYNKHGPGISTDDVTVRTLSDVPSAPPQNLTLEVLNSTSIMVRWLAPP
PGTLNGELTGYKLRYRKGLRRADAIEISTSQLLQLIDGLEKGKVYTVRVSATTVNGSGPT
TEWIAAETFENDLDESQVPGVPSSLHVRPLVNRIVVTWTPPENQDILVRGYKIGYGIGSP
HAHTVNLDYKQRFYSIDNLDPSSHYVITLKAFNNMGEGVPIYNSATTRPQSDPIDPDIDF
YELFNNPYTPAPDPTPMLPPVGVQATVLSHDTIKVSWADNSLAKNQKITDSRYYSIRWKT
NIPANTKYKTANTTSLFHTVTALKPNTLYEFSVMVTKSRRSSTWSMTAHGTTAETLPASA
PKDVTVISKEGNPRMININWQPPTEANGKITGYIIYYSTDVNAEVHDWVVEPVVGNRLTH
QIQGLTLDTAYYFKIQARNSKGMGPMSDAVHFRTPKAEPSDKMSSDQGLQVKPGHPTLPE
HGIGSNMDKPGITGSRENHILVIVVIVSVGAFTIIAVVVGAVLCTRRSNSHQKKKRAACK
SNTGSHKYKSSSKDLKPPDLWIHHERLELKPIDKSPDPNPVMTETPIPRAAQDPVEPSHQ
IQELEESVSTRRGVRPKIMMPFDSQPPQPVISAHPIHSLDHLHHHHHHYHLPPRGYLHHQ
ISLRAPASPNTHLHRSPSAESVRNQPAAPEPPVAPSQPITSAELQKTEALIKEEDPPSIN
PPAAHIRPTHPLKSFAVPALTVSAHNPPTYETALPSTPLLAQPAPGVKTASIGTLNRARA
PMPVTVPNAPDQSETSKMLDMTYETDELSEEMAHLEGLMKDLNAITTG
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggggggcacggctgctcgtgtttttcacaagtctcatcgttctccggttc
ggcggtgcggataaaggttctgccattcaagagttcaccccgttcaggttctccgttgaa
cccgtggacacgctagccgtacgcgggctccccgctgtgctgaactgctcagccgctagc
gccgctcccgtacgggtggagtggaagaaggacgggacgttcctgaacctggtggcggac
gaccggaaacgacagctagccgacggctcgttgctcatcagtacggtggtccacaataaa
cacaataagcccgatgagggggtgtaccagtgcgtggccagcatcgacaatctgggtacc
atcagcagccgaaccgcacgactcacagtggcaggacttccgcggttcctcagtcagccg
gagggcgtatctgtgcgcatgggcggctctgagatgctgagctgtgaggtgatggaggag
ctcgtcccgttcacgcgctgggagagggacggtcggcccgtggaactggatgccagagtg
attcagcttcccagtggagctctggtcatcagcaacgcctcccagaccgacgccggactc
taccgctgcacaatagatgctctggggccgccgaaaaccacagaggaggccgaactacag
gtgtccgcagattcgggtgttgaggaaaaactagagactctccagggcccggtttctgtg
gcgaaggttgtcggggagagcgtgctgttgccatgcgtcatgaagggatacccggttccc
gtgatccgctggacgtttaacgaccgctcgattgacgaaggtcatgagcgttttactgtg
attggcgggggaagcctgcagatcgtcaacctgacagaggaggatgctgggatatacgtc
tgccaggcggacggcggcaacatgaccagtgagatccaggcggagctcacggtgcacgtt
cctccacggttcgtgacgagaccctccaacacttacgcccaggagtcgatggacatcatc
tttgagtgtgacatcaccgggtccccgccgcccaccgtcagatggatgaaggacggagac
acagtcattcccagcgactatttcaggatagtgaagcagcataacctgcaggttttgggt
ttagtgaagtcagatgaaggtttttatcagtgtttagcggagaacgacgccgggaacgtc
caggccagcgctcagctcatcatactggatttagacgttgcccttccttctactgtcccc
tcattgaccgatgccactactgaccatgtagcgtccagtcctgccgagcgcagcggtccc
gctccttctgccccgcgtgacgtggtggcgtctctggtgtccactcgattcatcaagctg
acctggcgtcaacccgccgaaccgcacggggagaacatcacctactctgtgttctacagt
ctggacggcactaacagggagcgtgtggagaacaccagcggcccgggagagatgcaggtc
accattcagaacctcgtccccgacaccaagtacacgtttcgggtggtcgcgtccaacgct
aacggcccgggcgagagttctgccccgcttaccgtggccacccagctggaggttcaggta
ccgggtccggccccgaatctgcaggtggtgtcagtcggacccgcttcagtcgctctgagc
tgggagagaccggtcaacgggaacggggacattcagacatataaactcttctacagtgag
aagggacaagactcggagcaggacatggacgtcacgggtctgtcctacaccatgacgggg
ctcaagaagttcacagagtacagtttcagggtggtggcgtacaacaaacacgggcctggc
atctccaccgacgacgtcacggtccgaacgctgtctgacgtgccgagcgcccctccgcag
aaccttactctggaggtcctgaactcaacgagcatcatggtccgctggctggcgccccct
cctggtaccctgaacggagagctgacgggatataaactacgctatcggaaaggactgagg
agagccgacgctatcgagatctcgacctcgcagctccttcagctcattgatggtctggag
aaaggaaaggtttacacggtgagagtgtcggccaccactgtgaacggaagcggaccaacg
acggagtggatcgcagcggaaaccttcgagaacgacctcgacgagtctcaggtaccagga
gtccccagttctcttcatgttcgtcctctcgtgaaccgaatcgtggtgacttggactcct
ccagaaaaccaggatattttagtccgaggttataagatcggatacgggatcggaagccct
catgcccacacggttaatctggattacaagcagcgtttctacagcatcgataacctcgat
cccagttcccattacgtcatcactctcaaggcgttcaacaacatgggcgaaggcgtaccc
atctacaacagcgccacaactagacctcagtccgaccccatagaccctgatattgatttt
tatgaactgttcaataacccatacaccccagcccccgaccccacacccatgctgcccccg
gtgggcgttcaggccactgtcctcagccacgacaccatcaaagtcagctgggccgacaac
tcgctcgcaaagaaccagaagatcaccgattccagatattactccatccgctggaagacc
aacatccccgccaacaccaaatataagacggcaaacaccacgtctctgttccacacggtg
acggctctgaaacccaacacgctgtacgagttctccgtgatggtgaccaagagccggcgg
agcagcacgtggagtatgacggcccacgggaccaccgccgagacccttcccgcttctgct
ccaaaagatgtgaccgtgatcagtaaagagggaaatccacgaatgatcaacatcaactgg
cagcctccaactgaagccaacggcaaaatcacagggtacatcatctactacagcaccgat
gtgaacgctgaggttcacgactgggtcgtggagcctgtggtggggaaccgactgacccat
cagattcagggtctcacactggacactgcgtactactttaagatccaggccagaaactcc
aaaggcatgggacccatgtcggacgcggtgcacttccgcaccccgaaagctgaaccatcg
gacaaaatgtcaagtgatcaagggctgcaagtcaaacctggtcacccgaccctgccggag
cacgggatcggatccaatatggataagccaggcatcacgggcagccgagagaatcatatc
ctggtgatcgtggtcatcgtgtctgtgggagcgttcaccatcatcgctgtggtcgtggga
gccgtcctgtgcacgcgccggtccaactcccatcagaaaaagaaacgtgccgcctgtaag
tccaacaccggctcacacaagtacaagagctcatctaaagacctgaagcctcccgatctc
tggatccaccacgagcgcctggagctcaaacccatcgacaaatcccccgatcccaacccg
gtcatgacggagacgcccatccctcgcgccgcccaggacccggtggagcccagccatcag
attcaggagctggaggagagtgtgtccactcgcagaggagtcagacccaaaatcatgatg
cccttcgactctcagcctccccagcctgtgattagtgctcaccccattcattcccttgat
catcttcatcatcatcatcatcactatcacctcccgccgcgcggttaccttcatcaccag
atcagcctgagagcgcccgcctccccaaacacacacttacacaggtccccgtctgcagag
tctgtgaggaaccagccggccgcacctgaacctccggttgcccccagtcagcccatcacc
tcagctgagctccagaagaccgaggcattgatcaaagaggaagatccgcccagtataaac
cccccagcggcccacatccggcccacacacccgctcaagagcttcgctgtgccagcgctc
acagtttctgcccataacccgcccacctatgagacggccttacccagcacccccctgctg
gctcagccagcacccggcgtgaaaactgcgtccatcgggacactaaatcgagctcgagct
ccaatgccagtaacagtcccgaatgctcctgaccaatcagaaaccagcaagatgctggac
atgacgtatgagaccgacgagctctcggaagaaatggcccacctggagggtttgatgaag
gatctgaacgccatcactacaggctga
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integrated database retrieval system
