Pimephales promelas (fathead minnow): 120460741
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Entry
120460741 CDS
T08155
Symbol
col23a1a
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120460741 (col23a1a)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120460741 (col23a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120460741
NCBI-ProteinID:
XP_039504602
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MDASSEERSTESKQNAAKPLYLRYLVSFPTIVCLVISLSSIAVCFLMTFKTHQMDSRLRA
LEIKMSDICQESSMDVSVSQELRESIETLLQERLNEAMPKLRVARDVTQDCNCPPGPPGK
RGRMGRRGDPGPPGKSGRDGYPGPLGLDGKPGAPGLKGSQGLPGPKGDKGDQGDTGPRMV
FPRYDHGYISADQPSFQRRMLKGDQGQAGPPGPPGPPGAPGARGPPGNTGKDGPRGPQGD
TGAPGLDGIEGERGLPGQPGEVGDQGYPGPQGPPGLKGEQGEPGPQGDRGTDGLPGLKGD
KGDVGEQGPQGETGLTGEKGTSASGDIIDFNGKLLDAFQAIKTISVSGPPGPPGPPGQPG
KEGPKGELGLPGPAGVDGEKGEKGDTGEPGELGERGEKGEMGLSGPSGVDGQKGEKGDSI
LEDNLVQMISQPGPPGPPGPPGQPGYMGHRGMPGTKGDPGESIKGEKGENGASGIQGLQG
PQGPPGATGLVGLPGTKGEKGKPGEPGLDGFPGLKGDRGERGERGEQGDRGPVGKRGLKG
KKGEQGPPGLDQPCPVGGDGCKKEAVEIGQPAPEAPCPLGPDGLPIPGCWHKEQGMLQKL
KRKRLSQP
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatcttctgaggaaagaagtacagaaagcaaacagaatgctgcgaaaccgctt
tatctgcgttatttagtgtcttttcctaccatagtgtgtttagtgatatcgctgagttca
atagcggtgtgttttctcatgacttttaaaacgcaccagatggatagcaggctgcgcgcg
ctggagataaagatgagtgacatctgtcaagaatcatctatggacgtctctgtttctcag
gaactgcgggaatccattgagacactcttacaagagagactgaatgaagcaatgccgaag
ttgcgtgtggcgagagacgtgacacaagactgcaactgtcctccaggtcctcctgggaaa
cgtggacggatgggcagaagaggtgaccccggacccccaggcaaatctgggcgcgacggt
tacccgggtccactcggcctggatggcaaacctggtgctcctggacttaaaggaagccag
gggctgcccggaccaaaaggagataagggtgaccaaggagacactgggccaaggatggtc
tttcctcgttacgatcacggctacatctcggccgatcagcccagtttccagaggcgtatg
ctgaagggtgatcaaggacaagctggcccacctggacctccagggcctcctggtgcaccc
ggtgctagagggccgccaggaaacactgggaaggacggccctcgcggcccacaaggagat
acaggcgctcctggactagatggaatagagggagaaagaggtttaccaggacaaccgggt
gaagttggtgatcagggttacccaggaccacagggacccccagggttaaagggcgagcag
ggagagccaggtcctcagggtgaccgaggaaccgatggtctgccaggcttgaagggagat
aaaggagatgttggagaacaaggaccccagggcgaaacgggcctcaccggtgagaaaggc
acatcagcatctggtgacatcattgattttaatggtaaactcttggacgcctttcaggcc
atcaaaaccatcagtgtctcgggaccacctggccctcctggacccccgggacaaccagga
aaagaaggtccaaagggtgaactcggcttgcctgggcctgctggagttgatggcgaaaag
ggtgagaaaggagacactggagagcctggtgaacttggagagaggggggagaaaggagaa
atgggcctgtctggtccctctggagtggatgggcagaaaggagagaaaggagactctata
ctagaagacaatctggttcagatgatttcacagccgggaccaccagggcctccaggtcca
ccaggacaacctggatacatgggtcatcgtggcatgccaggcaccaaaggtgatccaggg
gagagtattaaaggagagaagggagaaaacggtgcttcaggaatacaaggtcttcagggt
cctcaagggcccccgggagcaacaggattagttggtctacccggcacaaagggtgaaaag
ggaaaacctggggaacctggattagatggttttcctggccttaaaggagacaggggtgag
cgtggggagagaggagagcagggagatcgcggtcctgttggaaagagaggactcaaggga
aagaaaggcgaacaggggccgccaggtctggaccagccctgtcccgtgggaggtgatgga
tgtaaaaaagaggcggtggaaattgggcaaccggcccctgaggccccctgcccactgggt
cctgatggacttccaataccaggttgctggcacaaggagcagggaatgcttcagaaactc
aagaggaaacgtctctcccagccttga
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