Pimephales promelas (fathead minnow): 120460798
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Entry
120460798 CDS
T08155
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04120
Ubiquitin mediated proteolysis
pprm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120460798 (syvn1)
04120 Ubiquitin mediated proteolysis
120460798 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120460798 (syvn1)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120460798 (syvn1)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120460798 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING-like
zf-ANAPC11
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
120460798
NCBI-ProteinID:
XP_039504689
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MVRATLVTTISLALTGTVIAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMVLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYTLHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNQNPAPAPAQAPAPAAPAPVP
PPVNVAPGMMPQFPPGLFPFWGPFPGAPPPAAPGAQAATDTPQTSTDGAQGSESGASSST
QPTADSASAAPGAIPGFPFSMPPPFTSAPWLPMPPPPPFMSSMPPPPSTLSTMSEAELRE
LEQEGRRGLEARLQCLHNIHTLLDAAMLNIHHYLSTVATLSPPRSETNTGEVSASVNLES
SPSPVNTETPSQENEAQSGESVNGATGFSRPDSTTEDDKDRMEGDEDDGEPSAAELRRRR
LRKLETTPTPDH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagccactcttgtgacgaccatcagtttggcactgactggcacagtcattgcc
catgcctacttcctcaagcaccagttctacccgactgtggtgtacctcaccaaaagcagt
cctagtatggcagttttatacattcaggctttcgtgttggttttccttttggggaaattt
atgcggaaggtcttcttcgggcaactaagagctgcagaaatggagcacctgattgaacgc
tcctggtatgccgtaacggagacctgcttggcctttacagtcttcagggatgatttttcc
cctcgctttgtggcccttttcactttgctgcttttcctcaagtgcttccattggctggct
gaagacagggtggattttatggaaaggagtccaaatatatcatgggtcttccacttcaga
gttctctctcttatggtgttgctgggagtgttagactttctgtttgtcaatcatgcgtgt
cacagcattataacaagaggggcatcagtgcagctggtttttggatttgagtatgcgatt
ctgatgactatggtcctcaccaccttcatcaagtacaccttacatacagttgatctgcag
agtgagaatccatgggacaataaagctgtctacatgctgtacacagagctctttacagga
ttcatcaaggtgcttttgtatatggcgttcatgaccataatgataaaagtgcacaccttc
cctctgtttgccattcggcccatgtatctcgcaatgaggcaattcaagaaggcagtaaca
gacgccatcatgtctcgacgagccattcgtaatatgaatactctctatcctgatgccacc
cctgaagacttgcaagccaccgacaatgtgtgcatcatttgcagagaagagatggtgact
ggagccaagaaactgccatgcaaccacatctttcactcaagttgcctgcgctcatggttc
caaagacagcagacatgtcccacctgtcgtatggatgtcctccgagcatcccagccaaac
cagaatccagccccagctcctgcacaagcacctgccccagctgctcctgcacccgtacct
ccacctgtcaatgttgctccaggtatgatgcctcagtttcctccggggttgtttccattt
tggggtcccttccctggcgcacctcctcccgctgcccctggagcacaggcagctactgac
accccacagaccagtaccgatggagctcagggatcagaatcaggagccagcagctcaact
cagccgactgcagacagcgcctctgctgctcctggagctatccctggattccccttttcc
atgccgccacctttcacgtcagctccatggctgccgatgcctccacctccaccatttatg
tcatccatgccaccgccaccatcaactctatccaccatgtcagaggctgagctccgagaa
ctggagcaggagggcaggcgaggtttggaagccaggttgcagtgccttcacaacatccac
acattgctggatgccgccatgctcaacattcaccactacctcagcacggtggctacatta
agtccgccaagatcagaaaccaacactggtgaagtgagtgcatcagtgaatctggagtcc
tcaccctccccggtcaacacggaaacccctagtcaggagaacgaggctcagagcggtgaa
tctgtgaatggagctacaggattctctcgaccagactccaccacagaggacgacaaagac
aggatggagggagatgaagatgacggtgagccgagcgctgccgagttgaggcggcgtcgt
ctccgtaaactggagaccacgcccactcctgaccactga
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integrated database retrieval system
