Pimephales promelas (fathead minnow): 120460916
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Entry
120460916 CDS
T08155
Symbol
rad54l
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120460916 (rad54l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120460916 (rad54l)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120460916 (rad54l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Rad54_N
Zn_ribbon_InsA
Motif
Other DBs
NCBI-GeneID:
120460916
NCBI-ProteinID:
XP_039504875
LinkDB
All DBs
Position
Unknown
AA seq
737 aa
AA seq
DB search
MRRSLAPSQVAKRKQGPDSDDEDWEPDIVSQSKRGCIEKYISPFRKPLTPLTNTPVWADG
NEHEDFIRKILSKPFKVPIQNYTGPLGLRALGLKRAGVRKALHDPFEDGALVLYEPPAIS
AHELIKADKEKLPVHVVVDPVLTKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGL
GKTLQCITLMWTLLKQSPDFKPEIDKAIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGS
KEEIDRKLENFISQHGIRVPTPILIISYETFRLHTEVLHKGKVGLVICDEGHRLKNSDNQ
TYQALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA
DASDKDRAAGEEKLQQLISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLF
LKQSKPVESLQTGKITVSSLSSITSLKKLCNHPALIYEKCLAGEEGFDGALDLFPPNYST
KAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRTRRYLYVRLDGTM
SIKKRAKVVERFNTPSNPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV
WRDGQKKTCFIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFLL
NEKTISDTHDRFRCRRCVNNRQVRPPPDDSDCTSDLSNWQHCSDKRGLRDPVLQASWDAA
VSFVFHQRSHEDQRGVV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaagtctagcacccagtcaagtggccaaaaggaaacaagggccggattcagac
gatgaggactgggagcctgacatcgtgtcacagagtaagagagggtgtatagaaaaatac
atctctcccttcagaaaacccctgacgccgctcaccaacacacccgtctgggcagatggc
aatgagcatgaagacttcattcgcaagatcttatcaaagccgtttaaagttcccattcaa
aattatacaggcccgttgggtctgcgggctctgggactgaagcgggccggtgtgaggaag
gctctacacgacccgtttgaagacggcgctctggttctgtacgagccgcctgccatcagc
gctcatgagctcatcaaagcagacaaggagaagttaccagtgcatgtggttgtagatcca
gtgctcactaaagtgcttcggccccatcagcgagagggtgtgaagttcctgtgggactgt
gtgacaggaaggcggattgaaaactcgtacggctgtattatggcggatgagatggggctg
ggaaagactctgcagtgcatcactctcatgtggactttacttaaacagagtcccgatttc
aaacctgagatcgacaaagccatcgtagtgtccccttcaagcctcgtgcgaaactggtac
aatgaagtgggcaaatggctgggtggacgcgtgcagcctgtcgccatcgatggcggatcc
aaagaggagatagatcgcaaacttgagaacttcatctcccagcatggcataagagtgcca
actccaattttaataatatcgtatgaaacattccgcctccacactgaagtcttgcacaaa
ggcaaagttggactggttatttgtgacgagggtcacaggctgaaaaactcagacaatcag
acgtatcaggcgctgaactccatgaacgctcagaggagagtgctgatatctggaacgccc
attcagaacgacttactggaatatttcagtttggtgcacttcgtaaattctggtatcctt
ggcacagctcaggagtttaagaaacgattcgagattccaatcctaaagggtcgtgacgcg
gacgccagtgataaagacagagctgccggagaggagaaactccagcaactcatcagcatt
gtaaaccggtgtttgattcgaagaacctcagatattctttccaagtatctgcctgtgaag
attgaacaagttgtctgctgcaatcttactcctctccagaaagagctgtacaagttattc
ctgaagcagtccaaacctgtagagagtctgcagaccggcaagatcacggtgtcttctctg
tcctccatcacctcgcttaagaagctctgtaaccatcctgccttgatttatgagaagtgt
ctggcaggagaagagggttttgatggagcattggacctcttcccaccaaattattcaact
aaagcagtagaaccacagctctcagggaagatgctggtgctggattatatcctggcgatg
accagaacaacaacaagtgataaagtggttctggtctctaactacacacaaactttggac
ctttttgaaaagttgtgtcgaacccgaagatacctttacgttagactggacggaacaatg
tccatcaagaagagagcaaaggttgtggagagattcaacaccccctctaatccagagttc
atcttcatgctgagtagcaaggctggcggctgtgggctgaatctgattggtgcaaatcgc
ctggtgatgttcgaccctgactggaatccagccaatgacgagcaggcgatggccagagtg
tggcgagatggacagaagaagacctgcttcatctacagactgctgtcgactgggacgata
gaggaaaagatcttgcagagacaggctcataagaaagctttgagtagctgtgtagtggac
gaggaacaagatgtggaaagacatttctctcttggagagctgcgagaactcttcttactc
aacgagaagaccatcagcgacacgcatgacaggtttcgctgtaggcgctgtgtaaacaat
cgtcaggtgcgccctcctccagatgattcggactgcaccagcgacctgtccaactggcag
cactgttcagacaaaagaggcctgagggacccggtgctgcaggcgtcctgggacgctgcc
gtctccttcgtctttcaccagcgctcgcatgaggaccagagaggagtcgtctga
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