Pimephales promelas (fathead minnow): 120460992
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Entry
120460992 CDS
T08155
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm02010
ABC transporters
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120460992 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120460992 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pprm02000
]
120460992 (abca1b)
Transporters [BR:
pprm02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120460992 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
120460992
NCBI-ProteinID:
XP_039504992
LinkDB
All DBs
Position
Unknown
AA seq
2282 aa
AA seq
DB search
MSVCTQLGLLLWKNFTYRRRQTLQLLTEIVWPLFIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGIVGNFNDSIISRLFSDAKKILLYSQNDK
SLNGFKELISAVKVMQNNTAGFKLKDFLRENETLSMFLLQNASIDPNYVKNILEADVNLE
KVLIKGFGVHLRDMCSSTTLEDFVTIPDKEVAKFTQDIICRSPKSWLDQAERHFKSNLDF
LKPLKSDIRTNPADVQQVSKATDNLLESLGSLAVELASMRSWSDLRNEILFLTENATGSP
SLMYKAVSRIVCGHPEGGGLKIKSLNWYEDSNFQALFGSHNDSDDESVSVYDNTTTPYCN
NLMRNMEASPISRMIWRALKPLLMGKILYTPHSPATQKIIHEVNKTFQELGILRDLGGMW
EEARPKFWNFMENSEEMDLMRTLLRNNATASFFNAQLAGTQWNVEDVISFLYKHSEDTRP
PGTAFTWRDVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESMSLLDNRKFWAGIV
FLDVQHNTLELPPHVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFSYLQ
DVVEHSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIK
GVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVLLLKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFTAKV
IASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPLEDDKYSLTTCLILMYFDSFLYGV
MTWYIETVFPGQYGIPRPWYFPFTKSYWFGEKTTNNTAIHGKKGNSGAVCIEEEPTHLEL
GVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA
YIMGKDIRSELSSIRRSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAETEQILT
DTGLPHKRKSRTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY
RAGRTILLSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKNSEPS
LSSCRNSSSTVSFVKKEDNASVSSSDAGLGSDQESEAATAIGTTWPESTVVPVDVALVSS
LILKYVPAARMVEDLGHEITYVLPYESAKDGAFVELFQDLDDRLADLGISSYGVSDTTLE
EIFLKVAEDSGVDAEIISDGTVPVRRHRQHAFGGDHQSCLKPLTEDNDFDCTESYGDPES
KETDYFNVTDGKGSYQVKGWSLKRQQFVALLWKRFLFARRSRKGFFAQIVLPAVFVCIAL
VFSLIVPPFGKYPSLALNPWMYEEQITFISDDAPHDISTQKLLNALLDDPGFGTRCMEGE
PILENPCTMGDEEWSTPEVPQSLMDIFTMTNWTMDNPSPACACSCNGKKKMLPECPAGAG
GLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGYSLGARST
QVLPPAEEIDDAISRVREIFQLGKNSGSAPDRFLKSLSAFINGLDTKNNVKIWFNNKGWH
SIGAFLNVMNNGILRANLPPGKDPRQFGITAFNHPLNLTKEQLSQVALMTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVVPATLVILI
FVCFQQKAYVSATNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGIN
GSVSTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADAMERFGENRF
RSPLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFFEPKSLSAKLSPIGEEDEDVARERQ
RIMNGAKQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLT
GDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPENE
VCEVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKAR
RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYT
IILRVAGPDPDLQPVMKFIECELPGSTLKEKHRNMLQYQLPSSLTSLSHIFSILAKNKEF
LRIEDYSVSQTTLDQVFVNFAKDQSDDHSDSSIRRKETGVNMAPLSPLSTKENMEKPIES
FV
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctgcactcagctgggtctgctgctctggaagaacttcacctacagaaggaga
caaacgctccagcttctgacggagattgtgtggcctctctttattttcttcatcctgatc
tccgtgaggttgaattacccgccttacgaacaacatgaatgtcactttcccaacaaagca
atgccctcagcaggcaccctgccatggatccagggcattgtatgcaatgccaacaatccg
tgctttcgacacccaacccctggggaatctccgggaatcgttgggaacttcaatgattcc
ataatctcacgcctgttttctgatgccaagaagatcctattgtacagtcaaaacgacaag
agcttaaatggattcaaggagcttatcagtgcagtaaaagtcatgcaaaataacacagct
ggtttcaagctgaaggacttcctgcgtgaaaacgagaccctctcaatgttcctcctgcaa
aatgcctccattgacccgaattatgtgaagaatattctggaggctgatgtgaatcttgaa
aaggttctgatcaaaggttttggcgtccatctgagagatatgtgcagctccaccacactt
gaggactttgtgaccatcccagacaaagaggtggcgaaattcacccaggacatcatctgc
aggtctccaaaaagctggctagaccaggccgagagacacttcaagtccaacctggatttt
ctcaaacctcttaagtctgacataaggactaatcccgctgatgtccagcaagtttccaaa
gccacagacaatcttctggagagcctgggatcactggctgtggagctggccagtatgagg
agctggagtgacctgcgaaatgagatcctgtttctgacggaaaacgccaccggctctccg
agtctgatgtacaaggctgtgtcccgtatcgtgtgtggacatccggaagggggtggcctc
aagattaaatccctcaactggtacgaggacagcaatttccaggcgctgttcggcagccac
aacgacagtgatgacgaatcggtttcagtttacgacaataccacaactccatactgtaac
aacttgatgaggaacatggaagccagtcccatctctcggatgatctggagggcactgaaa
cctcttctgatggggaagatcctctatacgccacatagccctgcaacccagaagatcatt
catgaggtaaataagacatttcaggagctcggaattctacgagatttaggaggaatgtgg
gaagaagccagaccgaagttttggaacttcatggagaacagtgaagaaatggatctgatg
cggacgcttcttcgaaacaacgccactgcaagtttctttaatgcccaattggctgggact
cagtggaacgtggaggatgttatcagctttttgtataagcactccgaggacacacgtccc
cctgggacggcatttacgtggcgggatgtcttcaatgagacggaccaggcaattatgagc
atatcccgtttcatggagtgtgttaacctggataaacttgaacctgtgagcacagaggag
aaactggtcaatgagtctatgagtctcctggataacagaaagttctgggcaggaattgtg
ttcctggacgtacagcacaacaccttggaacttccaccacacgtcaattacaagatccgc
atggatatcgacaacgtggaacgcacaaacaagattaaagatgggtattgggatcctggt
cccagggctgatccctttgaggatatgcggtatatttggggaggattttcttaccttcag
gatgtagttgaacacagcatcatcagagcagttactggaaccaaagagaagactggtgtt
tatatccagcagatgccttatccatgttatgtagatgatattttccttcgcattatgagc
cgctccatgcctctcttcatgactctggcctggatgtattcggtggccatcatcattaaa
ggcgtcgtctatgagaaagaggcccgactcaaagagaccatgagaattatgggactagac
aacggtatcctgtggttcagctggtttattagcagcctcattcctcttctcgtcagtgca
ggcctgctggttcttctacttaagatgggaaatctcctgccctacagtgaccctggcgta
gtctttctcttcctcgggtcattcgctgtggtaaccatcatgcagtgtttcctaatcagt
actgcgttcgcacgtgccaacctggcagcggcctgcggcggcattatctactttaccctc
tacctgccttatgtgctgtgcgtggcttggcaagactacgtgggcttcaccgccaaagtc
atcgctagcttactgtctccagtggcgtttgggtttggttgtgagtattttgcactgttc
gaggagcagggtgtgggcatccaatggaataacctcttctccagcccattagaagacgac
aaatacagcctcaccacctgcctcatcctcatgtactttgattccttcttgtatggggtc
atgacctggtacattgagaccgtattcccagggcagtatggcattcccaggccatggtac
ttccccttcactaaatcttactggtttggagagaaaaccacaaataatactgcaatacat
ggaaagaagggcaattctggtgccgtttgcattgaagaggaacccactcaccttgaactg
ggagtttacattgagaatcttgtgaaggtctaccgtcacggaaaaaagctagcagtcgat
ggcttgacacttggcttctatgaggggcagataacctcctttctaggtcacaatggagct
ggaaaaactactaccatgtccatcctaactgggcttttccctcccacctctggcactgcg
tatatcatgggcaaagacattcgctcagagctgagttccatcaggcggagcctcggagtg
tgtccacaacacaacgtcctcttcagcatgttgacagtagaagagcacatctggttctat
gcccgtctaaagggtctgtctgaggaggaagtgaaggctgagacggagcagattctgact
gatactggccttccacacaaacgcaaatccagaaccagccaattatcaggtggtatgcag
aggaaactctcggtagcccttgcttttgttggagggtcaaaagttgtcattctggacgag
cctaccgctggtgtggatccatacgctcgtagaggcatctgggaccttcttctcaagtac
cgtgctggtcgcactatccttctttctacccatcatatggatgaagcagacattctgggc
gatcgtattgccatcatttcccatggaaagctttgttgtgtgggttcctcgctgtttctg
aagactcaactgggaaccggatactatcttaccttggtgaagaaaaactcggaaccttct
ctcagttcttgcaggaactcgagcagcacagtgtctttcgttaagaaagaagacaatgcg
tcggtcagcagttcagatgctggtcttggtagcgaccaagagagcgaagctgccacagcg
attggaactacatggcccgaatctactgttgttcctgttgatgtggccctcgtctccagt
ctaatcctgaagtatgttcccgccgcccgcatggtggaagacctcggtcatgagatcaca
tatgtgttgccgtatgagtctgccaaagatggtgcttttgttgaactcttccaagacctg
gatgatcggctcgctgaccttggaatttcgagctatggtgtctcagatactacacttgaa
gagattttccttaaagtggcagaggacagtggagttgacgcagaaatcatctctgatgga
actgtgccagtgcgcagacatagacaacatgcatttggcggtgaccaccagagctgcctc
aaacccctgaccgaagacaatgactttgactgtaccgaatcttatggtgatccagaatcc
aaagagacagattatttcaacgtgactgatggaaagggatcatatcaggtgaaaggctgg
agtttaaagaggcagcagtttgtggcattattatggaagagatttctttttgctcgccgc
tcaaggaaaggcttttttgcacagatcgttcttcccgctgtgtttgtgtgcatcgctcta
gtattcagtctaattgtgccaccatttggaaaatatcccagcctggctcttaatccctgg
atgtatgaagaacaaatcacattcatcagtgatgatgctccacatgatataagcacacaa
aaattactcaacgccttattagatgatcctggctttggaacacgatgcatggaaggagaa
ccaattcttgagaatccctgtacaatgggcgatgaggaatggtctacaccagaagtgcca
caaagcctgatggacattttcacaatgacaaactggaccatggacaacccatcgcccgct
tgtgcgtgcagctgtaatggcaaaaagaagatgctcccagaatgccctgccggtgctggt
ggactgccacctcctcagattaagatcagtgaaactgagactctccagaacctgacagga
cgaaacatctcagactatctagtgaagacttacgcacagatcattgggaaaagcttaaag
aacaagatctgggtgaacgaattcaggtatggaggatattcattgggcgctagaagcact
caggtacttcctcctgctgaggagattgatgatgccatctctagagtcagggagatcttc
caactgggcaagaactccggatcagctcccgaccgtttcttgaaaagcctgtctgccttc
atcaatgggctggacactaagaataatgtcaaaatatggttcaataacaagggctggcac
agtattggagcattcctcaatgtaatgaacaatggcatcttgcgtgccaacttaccacct
ggtaaagacccccgtcagtttggcatcacggcgttcaaccatccgctcaatctgaccaaa
gaacagctttctcaagtggccctgatgaccacttcagtggacgtgctggtttccatttgt
gtgatcttcgctatgtccttcgttcccgccagctttgttgtctttcttattcaggaacga
gtgaataaggccaagcatatgcagtttatcagcggagttcagccatacctctattggctg
gccaattttctttgggatatgtgcaattatgtcgttcctgcgactctggtgatcctgatc
tttgtctgcttccaacaaaaagcctacgtctccgccaccaacttgcctgttcttgctctt
cttttgcttctatatggatggtccatcactcctctcatgtacccggcttctttcctcttc
aaaatccccagcaccgcttatgtggttctcactagcgtcaacattctcattgggatcaat
gggagcgtctccacatttgtcatggagttatttggaaacaatgagattggtggcattaac
gacatcctgaagaacgttttgctcatcttcccgcacttctgcctgggtcgaggtctcatc
gacatggtgaagaatcaggccatggctgacgctatggagagattcggcgagaaccgtttc
cgttctccactggaatgggacatggtaggcaagaatctttttgctatggctgtggaagga
gcggtcttcttcatcataacagtcctcatccagtatcgtttcttctttgaacccaagtct
ctaagtgctaagttgagtccgattggagaggaagatgaagatgtggccagagagaggcag
aggatcatgaatggagctaaacaaggagacattcttgaactccgacaacttactaaggtg
tacaagcgaaaacagaagcccgctgtcgatcgtctatgtgtgggaattcctccaggagag
tgttttggtctgcttggtgtcaacggagccggaaagaccagtacttttaaaatgctgacc
ggagactctgtggtcaccaaaggagaagcattcattgctggaaaaagtattctcagggaa
atagatgaagtacatcagaacatgggctactgccctcaatttgacgccatcaatgatctg
ctgacaggacgggaacacctggaattctacgccatcctgcgcggtgtacctgagaatgaa
gtctgtgaggttgcagagtggggaatccgtaaactgggtctagtgaagtacgtggacaaa
aacgcaggaagctacagtggcggcaacatgcgcaaactctccaccgccatatcactcatt
ggagcccctccagtggtcttcctggacgagcccaccacaggaatggacccgaaggcacga
cgagcactgtggaactgcattcacagcgtcatcaaagaaggacgctccgtcgtgcttacc
tctcacagcatggaagaatgtgaagcgctgtgtaccaggatggccatcatggtgaacggc
aggttccgctgtctgggtagtgtccagcacctgaagaacagatttggcgatgggtacacc
atcattctgagggttgcagggccagatcctgacctgcagccggtgatgaagttcatcgag
tgcgagctgccgggcagcacactgaaagagaaacacagaaacatgctacaataccagctt
ccctcctccctcacctccctctctcacatcttcagcattctcgccaagaataaagagttt
ctcaggatagaggactactccgtgtcccagaccactctggaccaggtgtttgttaacttt
gccaaggaccaaagtgacgaccactcagacagctccattcgtcgtaaagagaccggggtc
aacatggcccccctcagccctctgtccactaaagagaacatggagaagccaatagaaagc
ttcgtctga
DBGET
integrated database retrieval system
