Pimephales promelas (fathead minnow): 120461024
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Entry
120461024 CDS
T08155
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03020
RNA polymerase
pprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120461024 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
120461024 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120461024 (polr2b)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120461024 (polr2b)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120461024 (polr2b)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120461024 (polr2b)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120461024 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120461024
NCBI-ProteinID:
XP_039505039
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagacgaagatatccaatatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggattgttatcagctcatattttgatgaaaaaggtttggtg
cgacagcagctggattcattcgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggaa
ccgcctcgttacttgctgaagtttgagcaaatctacctttccaaacccactcactgggaa
agagatggtgctccctcacctatgatgccaaacgaagccagactccgaaatctcacgtat
tccgcccctctgtatgtggacatcacgaagactatcataaaggatggggaagagcaacag
cagacacagcatcagaaaacatttataggcaaaattccaatcatgctccgttccacgtac
tgtctcctgagcggcctgacagatcgtgatctttgtgagttgaacgaatgtccactggac
cctggtggctacttcattatcaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgctaagaaagactccaagtatgcttacactggagag
tgcaggtcatgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggagttaagaaaagtgccatcggccagaggattgtttccactctg
ccgtacatccggcaggaagttcccatcatcattgtgttccgtgctttgggatttgtgtct
gatagagacatccttgaacacatcatctatgactttgatgatcctgagatgatggagatg
gtgaaaccgtctttggacgaggcttttgtgattcaggaacagaatgtggctctgaacttc
attggctccagaggggctaaacctggtgtcactaaagagagaagaatcaaatatgctaaa
gaggttttgcagaaggaggtgttgccacatgttggtgtatcagatttctgcgagaccaag
aaagcttattttcttggttacatggttcacagactactgttggctgctctgggcagacga
gagctggacgacagagatcactatggcaacaagaggcttgatctcgctggacctttgctt
gcgtttctgttcagaggaatgttcaagaacctgctgaaggagatcaggatctatgcacag
aagtttattgacagggggaaggactttaatcttgagctagccattaagactcgcatcatt
tctgatggactcaagtactccctggccacaggcaactggggggatgtgaagaaagcccat
caggccagagccggagtatctcaggtgttgaacaggttgactttcgcctccactctttcc
cacctgcgccgcgtaaactcgcctataggacgagacggcaagctggccaaacccaggcag
cttcataacacactgtggggtatggtgtgccctgcggagaccccagagggccatgctgta
ggtttggtaaagaatctagctctcatggcctacatctctgtgggatctcagccgtccccc
atccttgagttcttggaggagtggagcatggagaacctggaggaaatctcccctgctgca
attgcagatgcaactaagatttttgtgaatggttgctgggtgggtattcacaaagaccct
gagcagctgatgaacactctacggaagctgaggagacagatggacatcatcgtgtctgag
gtgtcaatgatcagagatatccgtgagagagagatcaggatctatacagacgctggcagg
atctgccgtccgctgcttattgtggaaaaacagaaacttctgctgaagagacgacacatt
gaccagctcaaagagagagagtacaacaactacagttggcaggatctggtagccagtggt
gtggttgaatatattgacacactagaggaggaaactgtaatgttggccatgaccccagat
gaccttcaggagaagggcgtggcttattgctccacctacacgcattgtgagatccacccg
tccatgattttgggtgtctgtgcatccattattcctttccctgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggagtttacatcaccaacttc
catgtgcgaatggataccctggcacatgtgctctactacccccagaaacccttagtcacg
actcgttctatggagtatctacgtttcagagagctgccggcaggtatcaattccattgtg
gctattgcatcatatactggatacaaccaggaagattctgtcatcatgaaccgttcggct
gtggatcgtggattcttcaggtctgtgttctaccgctcgtacaaggaacaggaatctaag
aaaggctttgaccaggaagagatctttgagaaacccacccgagagacctgtcaaggcatg
cgacacgccatctatgacaagttggatgacgatggtttgattgctcccggtgtgcgtgtg
tctggtgaggacgtcatcattggtaaaaccgtaactcttcccgagaatgatgatgagctg
gatagcaccaaccgtcgctacactaagagagactgcagcacgttcctgcgcaccagcgaa
accggaatcgttgatcaagtcatggtcacgctaaaccaggagggctacaagttttgcaaa
atcagagtccgttcagttcgtataccacaaatcggagacaagttcgccagtcgtcacggt
cagaagggtacctgcggtatccagtacagacaagaggacatgccattcacatgtgaagga
atcaccccagatatcatcatcaaccctcacgccatcccttccagaatgacagtcggccat
ttgatcgagtgtctgcaagggaaggtgtctgctaacaaaggggagattggtgatgccaca
ccattcaacgatgctgtgaatgtacagaaggtctccaacctgctgtcagaatacggttac
catctgagaggcaatgaggttttgtataatggcttcactggccgtaagctcacctcacag
atcttcatcggacccacatactaccaacgtctaaagcacatggtggacgataaaatccac
tccagggcccgtggtccggtccagatcctaaacagacagcccatggagggtagatcacgt
gatggtgggctgcgttttggagagatggaacgtgattgtcagatcgctcacggtgctgct
cagttcctaaaagagaggctttttgaggcatctgacccgtaccaggtccacgtctgcaac
ctgtgcggcctcatggccatcgcaaacacccgcacgcacacctatgagtgcagggggtgc
cgcaacaagacacagatctctctggtgaggatgccgtacgcctgtaagctcttattccag
gagctgatgtctatgagcattgccccacggatgatgaccagctaa
DBGET
integrated database retrieval system
