Pimephales promelas (fathead minnow): 120461066
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Entry
120461066 CDS
T08155
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120461066 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120461066 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120461066 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120461066 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
120461066
NCBI-ProteinID:
XP_039505101
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MILSADSRTLLLFVTTLVAFLTVVKCQDENDQDPGSCTQDGQSYSDKDVWKPEPCRICVC
DTGSVLCDDIICEELKDCSKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITDVVG
PRGPSGPMGPPGEQGPRGERGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFASQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGNHGEPGEPGSSG
PMGPRGPPGPSGKPGDDGEPGKPGKGGERGPVGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGEPGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGGAGPPG
PVGPAGASGFPGSPGSKGEAGPTGARGPEGAQGPRGESGLPGSPGPSGISGNPGTDGIPG
AKGSGGAPGIAGATGFPGPRGPPGPQGATGPLGPKGQSGDSGLPGFKGEAGPKGEIGSAG
LQGAIGPAGEEGKRGPRGEPGSAGPIGPQGERGTPGNRGFPGQDGLAGPKGAPGERGPAG
VSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKAGPSGAAGEDGRPGPPGPQGVRG
QPGVMGFPGPKGGNGEAGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGTAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAGGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGGVGPAGTPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPEG
APGKDGARGLTGSIGPTGPAGPNGEKGESGPMGPSGAAGTRGVPGDRGETGPHGPAGFAG
PPGADGQPGLKGEQGEGGQKGDAGAPGPQGPSGSPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGSAGPPGEKG
DPGEDGPHGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGSPGLTGAAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGASGAPGGSGAPG
PVGPTGKQGDRGEAGPKGPSGPPGPAGARGMPGPQGPRGDKGEGGDSGERGQKGHRGFTG
LQGLPGPPGQPGDQGASGPSGPGGARGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGETG
PSGPPGNPGPPGLPGPPGPGIDMSAFAGLSQIEKGPDPLRYMRADQAAEGNHQHDAEVDA
TLKSLNNQVEDIRSPDGTKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCNM
ETGETCVYPKPANVPRKNWWTTKGSERKHVWFGEAMNGGFNFGYGDGNLAPNTASIQMTF
LRLLSTEASQNLTYHCKNSIAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKKHTGQWSKTVIEYRSQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattcaaggactttactgctatttgtgacaacactagtcgcattt
ttgaccgttgtcaaatgccaagacgagaatgaccaagatccaggcagctgcacgcaggac
ggacagtcatatagtgacaaggacgtgtggaaacccgagccatgtcgcatttgcgtttgc
gacaccggctcggtcctgtgcgacgatatcatctgcgaggagctgaaagactgttccaaa
cccgagatcccgttcggggaatgttgtccagtctgtgccgctgaccagccctcctcccct
ggcctgccaggtgctaagggacaaaaaggtgaaccaggagacataacagatgttgtggga
ccgaggggaccaagcgggccgatgggaccaccaggagaacaaggacctcgtggagagaga
ggagacaagggcgagaagggaagtccaggtcctcgtggcagagacggtgagccgggaacc
cctggaaaccccggccctccgggaccaccaggcccaaacggacctccaggcctcggcgga
aacttcgcctctcagatggccggtgggtttgatgataaagcgggaggagctcagatggga
gtgatgcaaggaccaatgggtccgatgggtccacggggaccaccaggccccaacggagct
cctggtccacaaggatttcaaggcaaccacggagaacccggagagcccggatcatctggc
cctatgggtccccgtggccctcctggtccatcaggaaaaccaggagatgatggtgaacct
gggaaacctgggaaaggtggtgaacgtggaccagtcggacctcagggagcgcgtggattc
ccaggaacaccaggtctacctggaatcaagggacacagaggatattcgggtctcgacggg
gctaaaggagagcctggagccgttggagcaaaaggcgagtccggctctcccggagaaagt
ggcgctcccggacccatgggtccccgtggtttgcctggtgaaagggggcgtccaggacca
tctggagttgctggtgctcgtgggaatgatggtttgcctggtggtgctggtcctcctggt
ccagtcggtccggctggagcttccggtttcccaggatcccccgggtctaagggtgaagca
ggacctaccggagcccgaggccccgaaggagctcaaggcccccgtggagagtctggcctc
cctggatctccaggaccctcgggaatctctggtaaccctggtactgacggcatccccgga
gctaaaggatcagggggcgctcctggtattgctggcgctactggtttcccgggccctcgt
ggccctcctggacctcagggagcgacgggtcctctggggcccaagggacagtctggggat
tcgggtcttccagggttcaagggtgaggctggtcccaaaggagaaattggcagcgctggt
ctgcaaggggccatcggccctgccggagaggaagggaagcgaggacccagaggagagcct
ggttccgctggacccatcggcccgcagggagagagaggtactcctgggaatcgaggtttt
cctggacaagatggtctggctggtccaaagggcgctccgggtgagcgtggacctgcgggc
gtatcggggcccaagggagccagcggagaccctggacggcctggagaaccgggtctgcct
ggtgcacggggtctgacgggacgtccgggtgatgccggtccacagggcaaagccggtcca
tctggcgctgcgggtgaagacgggcggccgggacccccggggcctcagggtgtgcgtggc
cagccgggagtgatgggattcccaggacccaagggtggcaatggtgaagctgggaaggcc
ggagagaagggactcgctggagctccgggtttgcgtggtctgcctggtaaagatggagag
acgggcgctgctggacccccgggacctgctggtactgcaggagagagaggagagcagggg
cagccaggaccatcgggcttccagggtctgcccggaccccccggtccccctggtgaaggt
gggaaacccggtgatcagggtgttccaggagaagctggagccggcggggccactggaccc
cgaggtgagcgtggtttcccaggagagagaggaggtgcggggccacagggcctccagggg
cctcgaggtttaccaggaactccaggaacagatggacccaagggtggcgtcggtcccgca
ggaactcctggagctcaggggcctccgggattacaggggatgcctggagagagagggacc
tctgggattcctggaccaaagggggacagaggtgacaatggtgagaaaggacctgaagga
gctcctggtaaagacggcgcaagaggtttaacaggttcaatcggtcctacagggcctgcg
ggacccaacggtgaaaagggagaatctggacccatgggaccatctggagctgctggtact
cgtggtgttcctggcgacagaggagagaccggtcctcatggtcctgctggttttgctggt
ccacctggtgcagatggacagcctggccttaaaggagagcagggtgaaggcggacagaag
ggtgatgctggggccccgggccctcaggggccttctggatctcccggtcctcagggacca
actggtgtgtctggaccaaaaggagctcgtggtgctcaaggacctcctggtgccacaggt
tttcctggagccgcaggaagagtcggacctcctggtcccaatggtaacccgggtccctct
ggtcccgctggtcctcctggtaaagatggtccgaagggtgttcgtggagacggtggtcct
cctggaagacctggagacgctgggttacgtggatcggctggtcctcctggtgagaaggga
gatcctggagaagatggtcctcacggtccggatgggccgtcgggtccccagggtttggct
ggtcagcgtgggattgttggactcccaggacagcgtggagaaagaggtttcccgggcctt
cctggaccctctggtgagcctgggaagcaaggagctcctggtggatctggagaccgtggg
ccgcctggacccgtgggatcaccgggactgaccggagccgctggagaacccgggagagag
ggcaaccctggatcagatggtcctcctggccgagatggttctgcaggaataaagggtgac
cgaggtgacactggtccagctggggcttctggggctccgggtggttctggtgctcctggt
ccagtcggacccactgggaaacaaggagaccgaggagaggctggacctaaaggaccttct
ggacctccggggcccgctggagctcgaggaatgcctggaccacaagggccgcgtggagat
aagggagaaggtggagattcaggggagagaggacagaaaggacacagaggtttcaccggt
cttcaaggtctgcctgggcctcctggtcaacctggtgaccaaggtgcttctggaccttct
ggacccggtggagcaagaggaccgccaggccctgttggtccagccggaaaagatggatca
aatggtttgcctggacctattggaccccccggacctcgtggtcgttctggagagactggg
ccatccgggccccctggaaatcctggaccccctggtcttcctggcccaccgggacctggc
atcgacatgtctgcgtttgctggtctgtctcaaattgaaaagggtcctgatcccttgagg
tacatgagggcagaccaggccgccgaaggcaaccatcagcacgatgcagaggtggacgcc
actctgaaatccctgaacaaccaggtcgaggacattcgtagcccagacgggactaagaag
agcccggcccggacctgcagagacctgaagctctgccacccagactggaagagcggtgaa
tactggattgatcctaaccagggctgcaccgtcgatgctatcaaggtgttctgcaacatg
gagaccggtgagacttgcgtctatccaaaacccgccaacgtcccacgcaagaactggtgg
actaccaagggttctgaacgcaaacacgtttggtttggagaagccatgaatggtggattc
aattttggctacggagacggcaatctggcaccaaatacagcaagcattcagatgacgttc
ctgagactgctgtccacagaggcctcgcagaacctcacgtaccactgcaagaacagcatt
gcctatatggacgaggccactggaaacctgaagaaagctcttctgctccagggatccaat
gatgtggaaatccgagcggagggcaacagtcgcttcacatacagtgttcttgaggatggt
tgcaagaaacacacaggacaatggagcaagacggtcatcgagtacagatcccagaagact
tcacgcctacccattgtggacattgcacctatggatattggaggagcaaatcaggagttt
ggagtggacgtgggcgccgtctgtttcttgtaa
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integrated database retrieval system
