Pimephales promelas (fathead minnow): 120461356
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Entry
120461356 CDS
T08155
Symbol
wdr33
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120461356 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120461356 (wdr33)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120461356 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
120461356
NCBI-ProteinID:
XP_039505436
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGMLNNSMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQIFRGHKKEATAVAWHPVHEGMFASGGSDGSLLFWN
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDMETNNVAAIPGMGIPETLKAAMEQEQSGKDMAAEPEMSIPGLDWGMEE
VMLKDQKKPPTKKVPYAKPIPAQFQQAWAENKVPAMAPGEVPKERKDEKKVDGKKKTQAE
IEQEMAALQYTNPMLLEQLKMDRMAQLQEQGMPPPAGQSGPVPPFPGQGGPMPPPAQGFP
QSMPPQQMPHNMPPVGPGGIPGPFISSGQMGPPGPMHQGPPPQGMMGPPDMHGHPRHPGP
HRNMGPQGPPGMSGPRGMQGPPHGGMPPGSGGPPGGMMGPPPRGXGPPQGGMMHQDMRGP
VPHGNMMGHQGPMQGGMMGPPPRTHGNMQGMGNMHGMGPPPGGMHGPPNNMQGPPGNMQG
PPGNMQGPPPYMQGKPSHMGDGNRGQFNQGQNPGPQSMMHGMGQQGPNGKGDAPRGPNHH
MGPPSERQGPGGGGQGSDGGQYWGDDGGYQEGWRRGPGGSGQDYSGGHRGSSGNQWEGQE
RFPSHDGEYMGHDRYDGYEGSGEEFDQRQRRPPRGDDSYRRGGPSGRGGMGGFQEEYGED
EGFDSQEDMGQGWGGRGRPRGGPPRGGHESYRDGQRPDHNIHDSPSPASRERSSSLQGMD
MASLPPRKRPWHDGPGTGDMDSPGAVPDDRAGRPSPREEGGYGPPSRGGRGGWGRGGPPN
PGGPGPNLGPNVRRGAPRGVMRGGRGR
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgacattggctcccctccccggttcttccacatgccccggttccagcaccag
gctccccggcagctgttctacaagaggccagactttgctcagcagcaggccatgcagcag
ctcacttttgatggcaagcgcatgaggaaagctgtcaaccgcaagaccattgactataat
ccatccgtcatcagatatcttgagaatcgattgtggcagcgagatcatcgagatttccgt
gccattcaaccagatgcaggctgctacaatgatcttgttcctccagttggtatgcttaac
aactctatgaatgctgttacaacaaagtttgtcagaacctcaaccaataaagtcaaatgc
cctgtttttgttgtgcggtggactcctgaaggcaggcgacttgtaacgggtgcctccagt
ggggagtttactctgtggaatgggctcacgtttaactttgagacaattctgcaggctcat
gacagccctgtcagggcaatgacctggtctcacaatgacatgtggatgttgactgccgac
catggaggttacgtgaagtactggcagtccaacatgaataacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgccacttgc
tctgatgatggaactgtacgcatctgggactttctccgctgtcatgaggaaagaattctg
agaggacatggagccgacgtgaagtgtgttgattggcatcccacaaagggtttggtggtg
tccggcagcaaagacagccagcaacctatcaaattttgggacccaaagactggacaaagt
ttggcaacactacatgcgcataaaaacactgtcatggaggtgaagtggaacctcaatggc
aactggctgttgacggcatcacgtgaccatttatgcaaactgtttgacatccgcaacctc
aaagaggagctacagatttttagaggacacaagaaagaagccacagctgttgcctggcac
ccggttcatgaaggcatgtttgccagtggcggctctgatggatcgctgctgttttggaat
gcaggtgtggagaaagaagtgggaggaatggagatggctcatgaaggaatgatctggagt
ttagcctggcatccactgggccacatcttgtgctctgggtctaacgaccacaccagcaaa
ttttggacaaggaatcggccaggggacaagatgcgggacagatacaatctgaacttgttg
cctggaatgtcagaagatgggatggaatatgatgacatggagaccaataatgttgccgcc
attccgggcatggggatcccagaaacgctgaaggctgccatggaacaagaacaaagtgga
aaagatatggcagcggagcctgagatgagcatccctgggctggattggggaatggaagag
gtcatgctgaaggaccaaaaaaagcccccgactaaaaaagtcccttatgcaaaacctatt
ccagctcagtttcaacaggcctgggcagagaataaggttccagcaatggctcctggagag
gttccaaaagaaaggaaggatgagaagaaagtagatggcaagaagaagacgcaagctgag
attgagcaggaaatggctgccctgcagtatacaaacccaatgttgctcgagcaactgaag
atggatcgaatggcacaattacaagagcagggaatgcctccccctgcaggacagtcaggg
ccagtgcctccctttccagggcagggtggcccgatgccccctccagcacaaggcttccct
caatctatgcctccacaacaaatgccgcacaacatgcctccagtgggaccaggtggaata
cctggtccattcatatcttcaggccaaatgggtccaccaggacctatgcaccagggtcct
cctccacagggcatgatgggacctccagacatgcatggacatccacgtcatcctggccct
cacaggaatatgggaccccagggtcctcctggcatgtctggccctagaggtatgcaagga
cccccccatggaggaatgcccccgggttctggtggacctccaggcggtatgatgggacca
ccaccgcgaggancagggcctccacagggagggatgatgcatcaggacatgagggggccc
gtgcctcatggaaacatgatgggccatcagggacccatgcaagggggtatgatggggcct
ccacccaggactcatggcaatatgcagggcatgggaaatatgcatggaatggggcctcct
ccaggtggtatgcatggaccaccaaacaacatgcaggggccaccaggaaacatgcaagga
cctccaggcaatatgcagggccctccaccatacatgcaaggcaaaccatcacacatgggt
gatggaaaccgaggacagttcaaccagggacagaatcctgggcctcagtcaatgatgcat
ggaatgggacaacagggtcctaatgggaaaggagatgctcctcgaggacctaaccatcac
atgggacccccatcggagcgacaaggcccaggagggggtggtcagggctccgatggaggc
cagtactggggtgatgatgggggttatcaagagggctggagaagaggccctgggggttca
ggacaggattactctggaggtcacagaggaagctctggaaaccaatgggagggccaggaa
aggtttccttcacatgatggagagtacatgggacatgacaggtatgatgggtatgagggt
tctggcgaggagtttgaccagaggcagagacggccaccgcgtggagatgattcatacagg
agaggcggcccaagtgggcgtggtggaatgggcggcttccaagaggagtatggtgaagat
gagggctttgattcccaagaagacatgggccaaggatggggaggaagaggaagaccacgt
ggtggaccaccaagaggaggtcatgagagttatcgggatggtcagcggccagaccacaat
atacatgacagtccatctccagccagtagagagcgttcctcctctttacagggcatggat
atggcctcgctgcccccacgcaaacgcccttggcatgacggaccaggcactggtgacatg
gactcccctggtgcagtgcctgatgacagagcaggtcggccatcaccaagagaggaaggt
ggatatgggcctccatcacggggaggaagaggtggatggggccgtggtgggccgcctaac
ccaggcggtcctggtcccaatctgggtccgaatgtcagacgaggggctccacgtggtgtt
atgaggggaggtcgcgggcggtag
DBGET
integrated database retrieval system
