Pimephales promelas (fathead minnow): 120461683
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Entry
120461683 CDS
T08155
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120461683 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120461683 (smarca2)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120461683 (smarca2)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120461683 (smarca2)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
120461683 (smarca2)
Chromatin remodeling factors
BAF complex
120461683 (smarca2)
PBAF complex
120461683 (smarca2)
GBAF(ncBAF) complex
120461683 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
120461683
NCBI-ProteinID:
XP_039505848
LinkDB
All DBs
Position
Unknown
AA seq
1578 aa
AA seq
DB search
MSTPNEPPVGMSHAGPSPGAGMSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHGIQG
QGAGEYSQDMQPMHKPMEGMLEKGMGDNVHYGQMKGVGMRSLHSGMGPPQSPMDQHSQGY
MSPHPSPLGQVPEHVPSPMSGGGPNPPQVSQGQSPMMPMDPQGLGQQARGQSAFSPVQLQ
QLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPVNTGPYNRPPGMPMPHGGSAT
GPCPPAMHNFTEASGLKPWPEGQGAETPSTPQKLAAPVPSGRPSPAPPLAPTGSQPVPST
SLTSQPQPQPPSGPGQPSLIIQLQQKQNRITPIQKPQGLDPVELLQEREYRLQARIAHRI
QELENLPGSLPPDLRTKATVELKALRLLNFQRQLRLDVVACMRRDTTLETALNSKAYKRS
KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKNQKLSK
AIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVA
NLTELVYEHKAAQAAKEKKRKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPVKVIQ
TETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDDEEVVSRAESEEK
KVIDPNSDEVSERAAKHIIDSAKQDVDDEYSVQAGETSSQSYYGVAHAVIERVDKQSTLL
INGTLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPYLII
VPLSTLSNWVYELDKWAPSIVKISYKGTPSMRRSFVPQLRSGKFNVLITTYEYIIKDKHI
LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL
PTIFKSCTTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP
EKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHP
YMFQHIEESFAEHLGYPNGIISGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTTLM
TIMEDYFSYRNFLYLRLDGTTKSEDRAELLKKFNSEGSQYFIFLLSTRAGGLGLNLQAAD
TVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI
QAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARNEDEFELFMRMDLD
RRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEEKIFGRGSRHRRDVDYSDA
LTEKQWLRAIEDGNLEEIEEEIRLKRRKRRRHVDKDMRREDGDKAKKRRGRPPAEKLSPN
PPKLTKQMNAIVDTVINYRDASGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKERVR
CHKYRSVGDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQSVFKSARQKIAREESDDDSND
DDDDEEDSEEESKSVKVKIKLSKRDERCQDKGKKRPSRGKAKPVVSDDDSEEEQEENFNR
KMSSQRGAKATMSEEEMS
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccccaatgagccaccagttgggatgtcccatgctggcccctcaccaggtgct
ggcatgtctccggggcccatcctagggcccagccctggacccggcccctctcctggctct
gtacacagcatgatgggccccagccctgggcccccaagcgtcccgcatggtatacagggc
caaggggctggagagtactcacaggacatgcaaccaatgcacaagccaatggagggaatg
cttgagaaggggatgggagacaatgtgcactatggccagatgaagggggtgggcatgaga
tccctgcacagtggcatgggtcctccacagagccctatggatcaacacagtcaaggttac
atgtcccctcatccctcgccattaggccaggtgccggagcatgtgcctagccctatgtca
ggaggagggccgaacccacctcaagtgtctcagggtcagtcgcccatgatgcccatggat
ccgcaggggttgggacagcaggcgaggggtcagtctgccttcagcccagtccagctacaa
caactcagggctcagatcctggcttacaagatcctgggccgtggtcagcctctgcctgaa
aatctgcagttagctgtgcagggcaagaggagcctccccaccatgcagcagcagcccgtc
aataccggcccgtacaacagacctccaggtatgccaatgcctcatggggggtctgcgact
ggcccgtgtcctccagccatgcataattttaccgaggcctctgggctaaaaccgtggcct
gaaggtcaaggtgcagagacccccagcactccacagaagctggcggccccagtgcccagc
ggcagaccctctccagctcccccgctggcccccaccggttcacaacctgtgcccagcacc
tctctcacctcccaaccccaacctcagccaccatctggaccaggccagccctctctcatc
atccagctccagcagaaacagaatcgcatcaccccgattcagaagcctcagggtctggac
cctgttgaactcttgcaagagagggaataccggcttcaggccagaattgctcacagaatc
caggagctagaaaatctcccggggtcgctgccacctgatctgaggacaaaagcaaccgtg
gagctgaaggccttaagactgcttaacttccagcgacagctgaggctagatgttgttgcc
tgtatgcgccgagacacgactctggagactgccctgaattccaaagcctacaagcgcagc
aagagacagaccctgagagaagctcgcatgactgagaaactagagaagcagcagaaaatc
gagcaggagaggaagcgccgacagaaacaccaggagtatctcaacagcattctgcagcat
gcaaaagatttcaaggaatatcacaggtccatctctggaaaaaatcaaaagctgtccaag
gccattgctacctggcacactaacacagagagagagcagaagaaggagactgaaaggatc
gagaaagagaggatgaggagactgatggcggaggacgaagaaggttacaggaagctaatt
gaccagaagaaggacaagcgtcttgcctaccttcttcaacagacagatgaatatgtggcc
aacctgactgagcttgtctatgagcacaaggctgctcaggctgcaaaggagaagaagagg
aagagaaagaagaaaaagaaggaagctggtgatgccgaaggaatgggagccatcgggcct
gatggagaacccatagatgagaacagccagatgagtgagctgccagtcaaagttattcag
acagagactgggaaagtgctgcaggggacagatgctcccaagtccagtcagttagaggct
tggctcgagatgaaccctggctatgaagttgctccacggtcagacagtgaagagagtggc
tcggaatttgaagaggaggatgatgaagaggtggtctccagagccgaatccgaagaaaag
aaagtcattgatcccaacagtgatgaagtatctgaaagagcagccaagcacatcatagat
tctgctaagcaggatgtggatgatgagtacagtgttcaggcgggagagaccagctcccag
tcttactatggagtggcccatgctgtcatagaaagggtggacaaacagtccacccttctg
atcaatgggaccctcaaacattaccagatccagggtctggaatggatggtgtcactgtac
aacaacaacctgaatggtattctggccgatgagatgggtctggggaagaccattcaaact
attgcccttatcacctatctgatggaaaacaagaggctcaatgggccgtacctcatcatt
gtaccgctctcgaccttgtctaactgggtttatgagttggacaagtgggcaccaagtatt
gtgaaaatttcctacaagggcacaccatcaatgcggaggtctttcgtgccgcagctccgc
agtggaaagtttaatgtccttataaccacctatgagtacatcattaaagacaagcacatt
ctagccaagattcgctggaagtatatgattgtggacgagggtcaccgcatgaaaaatcat
cactgcaagctcacgcaggtgttgaacacccactacgttgctcccagaaggctgttgctc
actgggacccctctacagaacaaattacctgagctctgggccctgctcaacttcctgttg
cccaccatcttcaaaagctgcaccacctttgagcagtggttcaatgctccatttgcaatg
actggagagagggtggatctaaatgaagaggagaccatcctcatcattcgccgtttgcat
aaggtattacgtcccttccttctgcgcagactgaagaaagaagtggagtcccagttacct
gagaaggtggagtatgtcatcaaatgtgacatgtcagccatccagaaggttctgtacagg
cacatgcagggcaaaggtatcctgctcactgacggttcagagaaagacaagaagggtaaa
ggaggtgccaagactttaatgaacaccatcatgcagctgaagaagatctgtaaccatccc
tacatgtttcagcacattgaggaatccttcgctgaacacttgggatatccaaatggcatt
atcagcggccctgacctgtaccgtgcctctggcaagtttgagttactagaccgcatcctg
cccaagctgaaggccaccaatcacagagtgcttctgttctgtcagatgaccaccctcatg
accatcatggaggattattttagctaccgtaacttcctctatttgcgtctggatggaact
acgaagtctgaggaccgggcagagcttttaaagaaattcaatagtgaaggctcccagtat
tttatcttcctgttgagcaccagggcaggtggtttgggcctcaatttgcaagctgcagac
accgttgtgatctttgacagcgactggaacccccaccaggacttgcaggcacaggaccga
gcccatcgcatcggccagcagaatgaagtacgcgtactgcgtctgtgcactgttaacagt
gtggaggagaagattctagcagcggccaaatataaactgaacgttgatcagaaggtcatt
caggctggcatgtttgatcagaagtcctctagccatgagcgtagagccttcctgcaggct
attctggagcacgaggaacagaatgaggaggaagatgaagttccagatgatgaaactctc
aatcaaatgattgctcgtaatgaggacgaatttgagcttttcatgcgcatggatttggac
cgccgtcgagaggatgcgcgcaaccctaaacgtaaacctcggctaatggaagaggatgag
ctgccatcatggatcctgaaggatgatgcagaggtggagcggctgacctgtgaggaagag
gaggaaaagattttcggcaggggatctcgtcaccgcagagatgtcgactacagtgacgca
ttgacggagaagcagtggctaagggctatagaggatggcaacctggaggaaatcgaggag
gaaatacgactgaagaggcgcaagcgtaggagacatgtggacaaagacatgaggcgtgag
gacggagacaaggccaagaaaaggagaggacgccctccagcagagaagctctccccaaac
ccacccaaactcacaaaacagatgaatgctattgtcgacacggtcatcaattatagagac
gcatcaggccgtcagctcagcgaggtctttgtgcagttgccctccaggaaagagctccct
gaatactatgaactgataaggaagccagtggacttcaagaagatcaaggagcgtgtgcgc
tgccacaagtacaggagtgtgggcgatctggagaaagacgtcatgctgctttgtcacaat
gctcagacttacaatctagagggctcacagatctatgaggactccattgttctccagtca
gtattcaagagtgccagacaaaagattgccagggaggagagtgacgatgacagcaatgat
gatgacgatgatgaggaagattcagaggaagagtctaagtcagtgaaggtgaaaattaag
ctgagtaaacgggacgagagatgtcaggacaaaggcaagaagagaccgagtcgtggaaag
gctaagcctgtggtcagtgacgatgatagcgaggaagaacaagaggaaaatttcaataga
aaaatgagcagtcagaggggagccaaagcgacgatgagtgaggaggagatgagctga
DBGET
integrated database retrieval system
