Pimephales promelas (fathead minnow): 120461815
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Entry
120461815 CDS
T08155
Symbol
cspg4ba
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pprm00535
]
120461815 (cspg4ba)
04091 Lectins [BR:
pprm04091
]
120461815 (cspg4ba)
Proteoglycans [BR:
pprm00535
]
Cell surface proteoglycans
Others
120461815 (cspg4ba)
Lectins [BR:
pprm04091
]
C-Type lectins
Others
120461815 (cspg4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Laminin_G_3
TgpA_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
120461815
NCBI-ProteinID:
XP_039506044
LinkDB
All DBs
Position
Unknown
AA seq
2388 aa
AA seq
DB search
MRTILLNGLLLIFVGIAQGASFFGDGFVQLKGTETSSRNTLHVRFRTSSLNGLLFLAAGQ
NDFLLLEMNAGRLQVRMDLGSGEQVLLSDSGTQLNDLAWHTAELLHELYNVTLTVDNHSK
TSLRMPGPERELHINDGLYVGGTGGLDQAYLSRDLNGFRGCLDEVIFNQHNLLSSLRPYS
GYKNVYEVSLGCSPQFFANEDDPISFFSSQAYISLPPWTAQHEWAFECSIHTSAEEGIVM
YSSARQGDFVALEIQKGHLVAVVGKDGSKTELRSLTFTSDNKWHVIKLFFTPKSLQLTVD
GETVKSTISSRSKSFYPKGFLFLGGIDDGTRSEVRKVGLSSVAGKRIKGGSFKGCFRDIK
INYAKMGLPNAVVTKDISVGCDPEKELEISTTVGPTTLPMTLVDSVTQLPTDVSTLAKGL
VKNYGHNFLQLRNLVVPEGGRGALDSKHIKVNLDFKKLGIRQSQIIFRIEEQPVHGQLRL
DVDQEQAEQTFSMLDLWHGRVMYIHGGSEDPQDYFMFSVFSSSRKEVPSYLKGHKLYRYN
VTVTPTNDAPELSLPEGNLFVLLENSKKRLTTDVLKAIDIDSNYTDLVYSVLGNLNSDAG
YLENEDNAGTPVTSFSHSALVEGKIYYIHTGVRNSRIVLRVSDGEKVSNTVVLRIMAVEL
EYKISNNTGLEVTQGEMFLLSTNQLAVWTNALKQVVDIRYDVIEPPKFGELQRMHSSGEW
KVTSSFSQRVLEKERLRYLSTHQSIQTSNSTDHFKCKVTVASRATEELVFPIKVKWIYYT
IENNEPVELDKITRAVIDPEHLYVTAHGVSLSEDKLCFRLLTLPKRGIIEVDNAKLDVNS
TFCQRDITDLKVEYKLVERSYEDTRDEFVFDVFSKHAHSASHIFKINIKADVNSIFLTNN
GLSLLEGERKLITKDDLFAETLSTTEIYYTITKMPQHGKLMRINLSNSTKAFDNIMSFTN
QDVLEERIMYVHDDSETALDSITFTASTGPVTKLPIRDNDIGSKEGIFNISIQLINDEKP
IRIVDKVFNVVRNGQRLLTLDDLRYHDADSDFSDGQLVYTRRGIPMGDLVLVNDTSHKLY
QFRQEDLEQKRVLFIHHGMNSGRFVLFVSDGKHYVSSLLDISTQDAYLKTGNNTGLLVQK
GQAKTLSNANFSVDTNLDIRNDNEIIFKVQEPPKHGSLYLKDSKTESFTQNDLRNDYLSY
HHDNSKNLVDVFTLLVEAKDLRLDVKIHVKVYLESHQRPPILLHNKTLLVDEGKPVKIES
SKLKVTHEASSSSEITFTIKVPPSHGYLRQFIESKYQYQGTLEDPLVTFSQRDVNDGNIQ
YVQVAPGQESDSFTMEASNGVAEVSNIIMSVDIIPCLIPIEVSNVTLKEGASKALTDDII
RVKNPHFSGLNFVYYISEGPLHGRIENSRFPGISTTYFTRKQVEQEFIYYVHDNTETSED
RFTVTANDTDLRKHSAPWTVHVQITAVNDEPPVITANRVLRVWVDSVTEITNEDLNAEDE
DTIPEQMEYIITQPSNGHLALKTAPNRPIMNFTQAHIDQRQLLFVHSGPMAGGFNFQVND
GVNFAPRQIFSITARALVLTLEKAGPLKVFPGSICLILNNILQAVTNDDSGITNRTIYFT
VINPPKFGKLVKLQADKTTTDISSFTQQMVDASEVAYQQSHGTSLGWAALDKFSFTVSSP
PATLETQTFDIDISYENVGPEQSSVLLKNKGVEVSEGDKVLIDKSMLDASNLITKQPESK
RSSYEVWYQVTSLPQHGVIVVGERNLTKEKPNFSQFILNKYGITYHHDNSETTHDHFDFD
VYLNLKSKPPPRTLDTEVVSETFNITIIPRNDQPPVLQTKTPSLKVVQGDTIAIGPNNLR
VVDLDNPPSEIQYTVISKPTNGFLAIAEHLNESVDSFSQAQINNGEVFFVHDGSPLSGAF
YFSVTDGHHRPLYKLFNLEVIEITVLLVNNTEVLLDQGHTSVTLTQSHLAAVTNGKNNTV
HYKVTVPPQYGKLLLNNEDVTVFSQDDLQTGKLRYHMVNLESSHDNFEFAAFTTEANLTN
QVVNITVKPLIKYTEGATFPNGIRIKLKPHLLNVSELALLSANDPSFEITSPPQNGRIVR
VGKGRKAESVRFFTFSELQQDKLSIELKANLTGVHEVNDSFGFVLKAENVQPATGIFAFR
IVPHVPTLEMSTMIPMSTLRPVFRNQTAEISLFPTSTLPLVRTTQQVTKSGSRFKGRNRW
GISNGNDMGTTNLKPAHGVEEIYPINNNPVKVESVSQTGFSSNSMIILLPLLALLLLVII
VVVSVLLLRRNWRKKPKPLKSTSGPPAQPNNSSHQDQLQWPATVPIVTVTPLTPRNAGSS
AITRLQPGIKDSYYGQSVSLCSIEDLEPEVSQLCRTTNPTLRNNQYWV
NT seq
7167 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgatccttttaaacggactactcttgatctttgtcggaatcgcacagggggct
tcgttctttggtgatggatttgtgcagttaaaagggacagagacgtctagccgtaacaca
ctgcacgttcgtttccgcacctccagcctgaatggcctgcttttcctggctgcagggcag
aatgatttcctgttgctggagatgaacgctggcagactgcaggtaaggatggatctgggc
tctggagagcaggtccttctctcagacagtggaacccagctaaatgatctggcctggcac
actgcagagcttctccatgagttatataatgtcacactgactgtggacaaccactccaag
accagtctgcgaatgccaggcccagagcgagagctgcacatcaacgatggcctttatgtg
ggtggtactggaggtttggatcaggcttatctttccagagatctcaatggcttccgtggc
tgcctcgatgaagtaatatttaatcagcacaatctcctttcatcactgaggccctactct
gggtacaagaatgtctatgaggtttccctaggatgcagccctcagttctttgccaatgaa
gatgacccaatcagttttttcagctcacaggcttacatatcccttccaccttggacagca
caacatgagtgggcttttgaatgctcaatacacacgtcagctgaagaagggatcgtcatg
tacagctcagctcgacaaggagattttgtcgccctggagatccagaaaggtcaccttgtt
gccgtggttggtaaagatggaagtaaaacagaactacgttccctcaccttcactagtgac
aataaatggcatgtcattaagctctttttcactccaaaaagtctccaactcacagtagat
ggagagactgtaaagtccacaattagctccagatcaaaatccttttatccgaaaggtttc
cttttccttggtggaatcgatgacggcacacgttctgaggtcagaaaggtcggtctttcc
tctgtagcagggaagcgtattaaaggtggctccttcaaaggatgcttcagagacattaaa
ataaactatgccaaaatgggtcttcccaatgctgtggtaaccaaagacatctctgttggc
tgtgatcctgaaaaggagctggaaataagcaccacagtgggcccaacaacccttcctatg
accctcgttgactctgtcactcagctgcccacagatgtgtccaccctagccaaaggtctt
gtcaaaaactatggacacaattttctacagcttaggaaccttgttgtcccggaagggggt
cgaggagccttggattctaagcatattaaagtgaacctcgatttcaagaagcttggcatt
cgtcagtctcagatcatatttaggattgaagagcagccggtgcatggtcaacttaggctt
gatgtagaccaggagcaggctgagcaaacattcagcatgctggatttgtggcacggcagg
gtgatgtacatccatgggggatctgaagacccacaggactacttcatgttctctgtattc
tccagtagcagaaaggaagtgccaagctatctgaaaggacacaagctgtaccggtataat
gtcaccgtcacgccaaccaatgacgctccggagttgagtctacctgaggggaatctgttt
gttcttctggagaactccaagaagaggctgaccactgatgttctgaaagccatagacatt
gacagcaattacacagaccttgtttattctgtgttagggaaccttaattctgatgcaggg
tatttggagaatgaagacaatgcaggtacaccagtaacttctttctcccattcagctctt
gtagagggaaagatatattacatccacacgggtgtgaggaactctaggattgttttaaga
gtcagtgatggagagaaggtgagtaacacagtggtgcttagaatcatggctgtggaactt
gagtataaaatctccaataacacgggtctggaagtgactcaaggagagatgtttctgtta
agcaccaaccaactggccgtctggaccaatgcattgaagcaggtggttgatattcgttat
gatgtaattgagccaccaaaatttggtgagctccagaggatgcactcaagtggagagtgg
aaagtcaccagctcgttctctcaaagagttcttgaaaaggagcgtttgaggtacctcagc
acccaccagtccattcaaacaagtaatagcactgaccacttcaagtgtaaagtaactgtg
gcctccagagctactgaagaactggtgtttcccataaaggtgaagtggatatactacaca
atagagaacaatgaacctgttgagctggacaaaattacaagagctgtaattgaccctgag
catctgtatgtaacagcacacggtgtaagcttgtctgaggataagctttgttttagattg
ttgactttaccaaaaagaggaataattgaagtggataatgccaagttagatgtgaattcc
acattttgtcaaagggacatcacagatctgaaagtcgaatacaaacttgtggaaagatca
tacgaggacaccagggatgaatttgtttttgatgtattctcaaagcatgcacattctgct
agtcacatttttaaaatcaatattaaagcagatgtcaacagcattttcttgacaaacaat
gggctgtcacttcttgaaggtgaaagaaaactcatcacaaaggatgacttgtttgctgaa
acgcttagcactacggagatttactacacgatcacaaagatgccgcaacatggtaagcta
atgcgaatcaacttgtccaactctaccaaagcctttgacaatataatgtcctttaccaat
caggacgttcttgaggagcgaattatgtacgttcatgatgacagtgaaacagctcttgat
agtattaccttcacagcctccacaggcccagtaacaaagcttcctataagggataatgac
attggttccaaagaaggcatctttaacatctcgatacagctgattaatgatgagaaaccc
atccgcattgtagacaaagtatttaatgttgtcagaaatggacagagattactcacactc
gatgacctgcgctaccatgatgcagattcagactttagtgatgggcagcttgtctacacc
cggcgtggtatcccaatgggggatttggttcttgtgaatgacacttcacataagctgtac
cagtttcgccaagaagacttggaacagaaacgagtgctgtttattcaccatgggatgaac
tctggccgttttgtcctttttgtgtcagatggcaagcactatgtgtcctctctgttggat
attagcacacaggatgcttatttaaaaactggcaacaacacaggcctgttggttcaaaaa
gggcaagccaagacacttagtaatgcaaactttagcgtggatacaaatcttgacatccga
aatgacaatgaaataatatttaaagtccaagagcctccaaaacatggaagcctgtattta
aaagacagcaagacagagtcattcacccagaacgacctgagaaatgactacttgtcctat
catcatgataacagtaagaatcttgttgatgtttttacactcctggtggaagcaaaggac
ctacggcttgatgttaaaatccatgtgaaagtgtacctggaaagccatcaaaggccaccc
atcctccttcataataaaactttgctggtggatgaggggaaaccagtcaagattgaaagc
agtaaactcaaggtgactcatgaggctagttcatcttcagaaataactttcaccatcaaa
gttcctccatctcatggctatttacggcagtttattgagagtaaatatcagtaccaagga
acactagaggatccattagtgaccttttcccagcgagatgttaatgatggcaacattcag
tatgtacaagtggcacctggccaagaaagtgattcattcaccatggaggccagcaacggg
gtcgcagaggtcagtaacatcatcatgtctgtggatatcatcccatgccttatacccatt
gaggtgtccaatgtcactctgaaggaaggggcatctaaagctctcacagatgacatcatc
agagtaaaaaatccacatttctctggccttaattttgtgtactacatctcagagggtccc
ctgcatggccgcattgagaattcacgtttcccagggatttccacaacttactttacaagg
aagcaggtggagcaagaatttatttattatgtccatgacaacacagagacctcggaggac
cgctttactgtcacagcaaatgacacagacctgcgaaaacacagtgcaccatggactgtg
catgtccagatcacagccgtcaatgacgagcctccagtcattacagccaacagggtactc
agggtgtgggttgactctgtcacagaaatcaccaatgaggatctgaatgctgaagatgag
gacacgatccctgagcagatggagtacatcattacccaacccagcaatggtcatctggct
ctgaagactgcccctaacaggcccattatgaacttcactcaagctcacattgaccagaga
caactgctttttgtacatagtggcccaatggcaggaggctttaacttccaagtgaacgat
ggtgttaactttgctcccagacagatattcagtattacagctcgtgccctggttcttact
ctagagaaggctggacctcttaaggtgtttccaggctccatttgcttgattttaaacaac
attcttcaggccgtaacaaatgatgattctggcatcacaaatcggaccatttattttact
gtgatcaatcccccgaaatttggaaaactggtcaaattgcaggcagacaagaccacaaca
gatatttcatcattcacacaacaaatggtggatgcgagtgaagtagcatatcagcaaagt
catgggacctctttgggatgggcagcactagataagttctcttttactgtgtcatctcct
cctgctacgcttgaaacccagacgtttgacattgacatttcatacgaaaatgttggaccg
gaacaaagttctgtgcttcttaaaaataaaggtgtggaggtatctgaaggagataaagtg
ctaattgacaaatcaatgctggacgcatccaatcttataactaaacaacctgaatctaag
cgcagttcttatgaggtttggtaccaggtcacatctctcccacagcatggtgtcatcgtc
gttggggaacgaaatcttacaaaagaaaagcccaatttttctcagttcattctgaataag
tacggaatcacataccatcacgacaactccgagaccacccatgaccattttgactttgat
gtgtatctcaacctaaagagcaaaccaccaccccgcaccctagatacagaggtcgtgtca
gaaacattcaacatcactataatccccagaaatgatcaaccacctgttctacagaccaaa
acccccagcctcaaagttgtacagggggacaccatagctatcggacccaacaacttaagg
gtggttgacctggataacccaccatctgaaatccaatacactgtgataagcaaacctacc
aatggattcctagccattgcagagcacttgaatgagtccgtggactccttctctcaggct
cagatcaataatggagaggtgttctttgttcacgatggcagtcctttatctggagcgttc
tacttcagcgtcaccgacggccatcatcgtccattatataaattgttcaatctggaagtc
atagaaatcactgttttgcttgttaacaacacagaggtgctactggaccagggacacact
tctgtaacactcacacagtcacacctcgccgcagtgaccaatggtaaaaacaatacagtg
cactataaagtcacagtaccgccacagtacggtaaactcctactgaataatgaggacgtc
actgttttcagtcaagatgatctccagacgggaaagctaagatatcacatggtcaacctt
gagtcgtcccatgataactttgagtttgcggccttcacaacagaagcgaacctaactaac
caagtagttaatatcaccgtgaaacctctcattaagtacacagaaggggcaacgtttcca
aacggaattcgaattaaactgaagccacatttgctaaatgtgtctgaactggctttgttg
agtgctaatgacccatcatttgaaataacatcaccacctcagaatggcaggattgtcagg
gtgggcaagggaagaaaagccgaatctgtgagatttttcacttttagtgaactacagcaa
gataaactctccatcgagttaaaggcaaacctgacgggcgtccatgaagtaaatgactct
ttcggatttgtgcttaaagccgaaaacgtccaacctgccactgggattttcgctttcagg
atcgtacctcatgttcccactctggagatgtcaacgatgatcccaatgtccacactcaga
cctgtttttcgtaaccaaaccgctgaaattagtttgtttccaacctcaacacttccactg
gtgcgtacgacgcaacaggtgaccaaatctgggtcaagattcaaaggtcgcaaccgttgg
ggtatttcaaacggcaatgacatgggtacgaccaacctgaaaccagcccatggggtggag
gagatttatcccataaataataacccagtgaaagtagagtcagtttcccagacgggcttc
tcctcaaattcaatgatcatccttttgccccttcttgctcttctgcttctggtcatcatt
gtggtcgtgtcagtgctgctcttaagaaggaactggagaaagaaaccaaagcctttaaag
agtacatcaggtcctccagctcaaccgaacaactcgtcccatcaagaccagctacagtgg
cctgcaactgtccccattgtaaccgtcactcctcttactccaagaaacgctggaagttca
gccataactagacttcaacctggaattaaagactcctattatgggcaatctgtgtctctg
tgctctattgaagacctagagcctgaagtttcacagctttgcaggaccaccaaccccacc
ctgcgaaacaatcagtactgggtatga
DBGET
integrated database retrieval system
