Pimephales promelas (fathead minnow): 120462247
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Entry
120462247 CDS
T08155
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120462247 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120462247 (ddx5)
03009 Ribosome biogenesis [BR:
pprm03009
]
120462247 (ddx5)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120462247 (ddx5)
Spliceosome [BR:
pprm03041
]
Complex A
U1 snRNP components
U1 related factors
120462247 (ddx5)
Complex B
120462247 (ddx5)
Ribosome biogenesis [BR:
pprm03009
]
Eukaryotic type
Pre-60S particles
Helicases
120462247 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120462247
NCBI-ProteinID:
XP_039506745
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MPGYSDRDRGRDRGSYSSGPPRFGGSRNGPPQGKKFGNPGDRLRKKHWNLDELPKFEKNF
YQEHHEVSRRLPQDVEHYRRTKEITVKGRDCPKPIMKFHEASFPNYVMDVISKQNWTDPT
PIQAQGWPVALSGKDLVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRE
LAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDR
GGRSRGGRGGGFRDDRRDRHSSSRRDFNSYSQDNRNGGDSYGQKKVFGNKTQNGSSGYSG
GGGSSSSFNGGYSNNGQGSFGNQSGGFGNQGYQNQQFGPNQGSVQSSMNHPPPFPFNPQQ
MQQSMPFPMAPPAFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggtcgcgacagaggtagctacagtagtggcccc
ccacgctttggaggtagcagaaatggaccacctcagggcaagaagtttgggaatccaggt
gaccgtctgcgaaaaaagcactggaacctggatgagctccccaagtttgagaaaaacttc
taccaggagcaccatgaggtttctcggaggttacctcaagatgttgaacattacaggaga
accaaagagatcacagtgaagggtcgagactgtcccaaacccatcatgaaattccatgaa
gcaagctttccaaactatgtgatggatgtgatatcaaaacagaactggactgatccaacc
cccatccaagctcaggggtggccagttgcacttagtggcaaagatctggtcggcattgca
cagaccggctcgggaaaaaccctctcgtacttgcttcctgctattgttcacataaatcac
caaccattcctggagcacggagacgggcccatttgcttagtgttggctcccacccgtgag
ttggcacagcaggtccagcaggtggcggcagagtacggaaaagcttctcgtctgaagtcc
acctgcatctatggaggtgcacccaaaggaccacaaatccgggacctggaaaggggagtt
gagatctgtattgccacacctggaaggcttattgatttccttgaagttggaaaaacaaat
ctgcgcagatgcacgtatcttgtgctggacgaagctgacaggatgcttgacatgggtttt
gaacctcagattcggaaaatcttggaccaaattagaccagaccgacagactcttatgtgg
agtgctacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggagtatgta
cagatcaatgttggtgctctgcagctcagcgccaaccacaacatcctacagattgttgat
gtttgcaatgatggcgagaaagaggacaaactgatacgtctgctggaggaaatcatgagt
gagaaggagaacaagactattatctttgtggagaccaaaaggaggtgtgatgatcttact
aggaggatgcgtagggatggatggccagcaatgggtatccatggagacaaaagccagcag
gaacgagattgggtgctcaatgaattcaaatatggaaaagcacccatcctcattgccaca
gatgtcgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactac
cccaacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaact
ggcacggcgtacactttctttacgcccaacaacatgaaacaggcccacgacctcgtctct
gtcctccgggaggctaaccaagccataaaccccaagctcatccaaatggccgaagacaga
ggaggtcgttcaaggggagggcgaggtggggggtttagggatgaccgccgggatcgccac
tccagcagcagacgggacttcaacagctacagccaggacaaccgtaatggtggtgactca
tatgggcaaaagaaggtgtttggaaacaagactcaaaacggatctagtggctacagcggc
ggcggaggcagcagtagcagctttaatgggggttacagcaataacggacagggtagtttt
ggcaatcagtctggtggctttggaaaccaaggctatcagaaccagcagtttggtcccaat
caagggagcgttcagagcagcatgaaccaccctccaccgttcccctttaaccctcaacag
atgcaacagtccatgccgttccccatggcccctcctgcattccctcagtaa
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