Pimephales promelas (fathead minnow): 120462290
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Entry
120462290 CDS
T08155
Symbol
si:dkey-22o22.2
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120462290 (si:dkey-22o22.2)
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Cadherin related
120462290 (si:dkey-22o22.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_FAT4_N
CADH_Y-type_LIR
EGF
Cadherin_CELSR2_9th
Fibulin_C
hEGF
Cadherin_4
Cadherin_pro
EGF_2
He_PIG
EGF_Teneurin
3keto-disac_hyd
Big_10
cEGF
Motif
Other DBs
NCBI-GeneID:
120462290
NCBI-ProteinID:
XP_039506811
LinkDB
All DBs
Position
Unknown
AA seq
2780 aa
AA seq
DB search
MRAHLRNPTFFRFSTACFLITLIAIPFVHSTEFYGQTEENAPPGTVVAGFLFPLEDTCKK
SNLPGLKTVLTGENSSDFSLEYVDNTGFVLKTTKTFDVKSKSSYTLIARLPRCNQIAEEV
AVKIEILDKNDNTRLFNVTADRIEILTDVKSRVRKPRAVSEAVSYSITVSEDVKVGDLIF
TVPDQRFEKKWFEVVSDGHSPVQIERDLGRVYLAHRLMSTAEVMVKIHNMRGDEWYLCRL
TLTLSNLSDLQWAMFPYPYLAAVGPDTGAGSVVYKLVARTGDGSVGTAHFLLVDGGEDSF
EVDRTTGEVKTTGRPLTPSKEYTLTVQAVDSQGRRGPLASVFILAGFRPPQFTNTTYTIY
IPESTGVGQAVAVVQAISFQRKSLSYMLLVNPGNLFSINQESGALSLTRTVDYEGGQHLH
HLQVRASEPDTGLSNMAEVVVHITDENDCTPEFMHSIYSRDNVPETTPTGTSLLQVLARD
CDTGLNAELSYFIQSVDFDISSQGVVSPSQRLDYERPNHMYECTVVAVDKGTPPRTGTAS
IRIRMANVNDEAPVFSQTIYKTFLSEDAGPETLVAIVHAKDPDGDGVTYAITGGNEDSNF
ELDNQKGIIKLRRSPPPKLRGPQYVLSVTATDDNAAGGPLLLSSSAQVIVGINDINNNKP
VFDECHNYSVNALVLENQPPGTSVLRVRAHDADTGVNGEVKYGIMQRDGATPGFTINPDT
GVISTVLSFDRERQREYTLSVTATDQAQEPLIGICQITVLIADQNDNDPKFENSRYQYFL
REDTPVGTSFLRAAAHDDDQGTNAAITYSLSQENPAYFHINPSTGWIYVNQPISQTSRIS
QQIIATDGGSRSSSVDLTVIITNVHNQPPQWEQAEYWVTIPENTPRDSKIVTIKATSPLG
DPRVTYNLEEGQVPETNMPVRFYIKPNRRDGSASILVAENLDYETTRFFTLRVRVQNVAA
VPLASFTTVYVNVTDVNDNVPFFMSSTYEATVPEGAEIGTSVAQVSASDLDSGLHGMINY
VILKDQSGDSQFFSINSYTGIIHTRATFDREQKGSYLIEVQSQDSSESARPGQQGQPNTD
TAYVRVFVTDVNDNAPAFSQPVYEISVEEDKEVGFVVITVTANDEDEGANAKLRYQITSG
NTMGTFDVEPEVGTIFIAQRLDYEQVQRYELRLVASDGKWENQTMVVINVINQNDEAPLF
TQTEYHGSVMEELTDLPVLVLEVSATDPDQEADQRAVRYSLHGQGAGSEFTIDEMNGRIF
VQRRLDREVRSAWQFLVLATDENGAGLTGFADVLVDVLDINDNAPVFLCATDNCFLGHVP
ENSPADTSIMEMRATDLDDPKAGKNAILTYRIVQNVRNEINLNLFSINPATGTIYTVLRS
LDREVVDRYLVVVEARDGGGLSGTGTATIVVSDVNDHPPVFTQRVYMASMPENLDINSEV
VVVAATDGDEGENSVMTFSIIGGDEDRKFFIETDKVNRRGIVRLKKKIDFEKPHERTFNL
TVKVEDADFFSLAYCIIQVEDSNDHAPVFFPQFYEAGSMFEDVPVGTIVAQVTAVDLDSG
QNGRFTYSIAPESDPFQQFLVDKSGWVVVADSLDREKVSQHRLIILATDMGSPALTGSAI
VLVTVQDVNDNGPEFEAPYQPVVWENTVAPQVVHMNDSSVLLHAIDRDSSSNGGPFSIRL
LMLTSDVTNFNLTDLRNGSAMITALRSFDREQQKRYLLPILMIDSGSPPMSSTSTLTVII
GDKNDHPHAPGHSEFIVYNLQGTLHTTVLGQVQSPDLDDWSEKVYKFEGKPPRQFSLNQN
SGQLSIREGTAAGSYSLQVRVADKSWPDVTSSAEVTVMELEEEALRNAGSIRLANLTANE
FFRASTNEESRYTRFRRLLSELFQTDMENVDVFSLASGSQPAQHHLSVWFAAHGSPYYKP
EKLHGYVSMHKAKLESVLGVSILQVGVDECAYAACGQTGGCFSKVTFSDTPKTLNNGNVS
LVSVSAKASAQCGCIAREAIHLHCSSYSQNPCLNGGTCVDSELGYRCKCPPMFDGPECQQ
TKHSFLGNGYAWFPPIRPCFQSHISLEFITEAANGLLFYNGPIGTPQPREKEDFIALELK
NGVPTLSVNHGSGTLTLQLPATATVMDRRWHHLDIISDGKTVQMILDYCSGAMVNEVEGL
GLEMSETDQSVCKASGETPGSERFLDIYQPLQLGGVKETHSPRKLHPNYKGFVGCMRNLV
VDSQVYDLNSPAESENSAPGCALTDGVCLTAGGPSCGVHGKCLGEWGSFSCDCHPGYSGH
KCDKALPEWSFEKDSVLRYQLRGLGSPRRTQAHLLLRTRSSTGSLLSMASRDTNEFIILE
IVDGYLTVRANLGDGTHHLKLTGQRVNHGQWVLVSLHRHDNIFTLRLEQGGGSREVTEVL
GQKKEIIVHPSSVFLGNSATPDTQGDFQGCMRDVRLNGHSLLLDGQGTEFSTILERHGVV
PGCHSDACSAKPCLSPLFCTDLWRKHECRCPANQVAVVDEVTGILHCAPSPCGPTTCRNG
GTCLADSTKSYQCRCPEGFRGQWCEIGQIKALRLAPLGPSSILAISMCLLVFFAVLVAVT
VWNQKGSRNKFRKRGVYHIPAEHESWEDIRENILNYNEEGGGEQDQNAYDITELKRPLCS
SLSQSSSCTTAPLIKSSQGSQEEVHPCGNITNGATLPYHHNASCGGHCAMDFKSYVSRII
WEADNDSLAFPMDTYHVYSIEGTGSCAGSLSSLGSAISEEGFSYDSLQHWGSKFQGLIEL
YRRPELAVPYMDTVQSQSQE
NT seq
8343 nt
NT seq
+upstream
nt +downstream
nt
atgagggcgcacttacggaatccgactttcttcagattttctactgcatgttttttaatt
actttgattgccattccgtttgtgcattcgactgaattttatggacaaactgaggaaaac
gcaccgcctggaactgttgtcgctgggtttcttttccctctggaagacacatgcaaaaaa
tcaaacttgcctggacttaaaacagttctgacaggggagaactcgtcggatttctctctt
gaatatgtggacaacacaggattcgttttaaaaaccaccaaaacttttgacgtaaagtcc
aaatctagctatacgttgatcgcgcgcttgccgcgctgcaatcaaatagccgaagaagtg
gcggttaaaatagagatacttgataaaaacgacaatacacgactttttaacgtaacagct
gacagaatagagattcttaccgatgttaaaagccgagttaggaagccaagagccgtttct
gaagcagtatcctacagcattacagtgtccgaagatgtgaaagtcggagacttgattttt
acggtgccggaccagaggttcgagaagaagtggttcgaggtggtttcggacggacactca
ccggttcagatagaaagagacttgggacgcgtgtacttggcgcatcgtttgatgtcaaca
gccgaggtcatggttaaaatccacaacatgagaggggatgaatggtacctgtgccggctg
actctgaccctctccaacctgtccgatctgcagtgggccatgttcccctatccttacctg
gcagctgtgggccctgacactggtgctggctctgtggtctacaagcttgtggcccgaact
ggtgatggctcagtggggacagctcacttcctattggttgacggtggggaagactcattt
gaagtggaccgaacaacaggagaagtgaagaccacagggcgacctctgacccccagtaag
gaatacacactgaccgtccaggccgtggactcgcagggcaggaggggtccgctcgcctct
gtgttcatactggccggcttccggccccctcagttcaccaacaccacctacaccatttac
atcccggagagcactggggtgggccaagcggtggcggtggtccaggctatctcgttccaa
aggaagagtctgtcttatatgcttctagtaaacccaggcaacctgttcagcataaaccag
gagagtggcgcgctcagcctgacacgtactgtggactatgagggtggacaacatctccat
cacctgcaagtcagagcttctgaaccagatacaggactaagcaacatggcagaggtggtg
gttcacatcacagatgagaatgactgcacaccagagtttatgcactccatttacagtcga
gacaacgtccctgagaccacgccaactggtacatcattactgcaggttctggcaagggac
tgtgatactgggctgaatgcagaactctcctacttcatacagagcgtggactttgacatc
tcatctcaaggagtggtgagccccagtcagaggctggactatgagagacccaatcacatg
tacgagtgcacggtggtggccgtggacaagggaacgccccctcgcacaggcacagcctcc
atccggatccgcatggccaatgtcaacgatgaagcccctgtcttttcacaaactatatat
aaaaccttcctttctgaagatgccggccctgagacgttagtagccattgtgcatgccaaa
gacccagacggggatggcgtaacgtatgccatcaccggaggtaacgaagacagcaatttt
gagctggacaaccagaagggcatcatcaaactccgccgtagtcctccccctaaactgcgc
gggcctcagtatgtcctcagcgtcacggcgaccgatgacaacgcagcaggcgggccactg
ctcctcagcagctccgcccaagtcatcgttggcatcaatgacatcaacaacaacaagcca
gtatttgatgagtgccacaactacagcgtgaatgcattggtcctcgagaatcagccccca
ggcacttccgttctgcgcgtgcgcgcccacgatgccgacacaggggtcaacggggaggtc
aagtacgggataatgcagagggatggagccacaccaggcttcactataaaccctgacaca
ggtgtgatcagcacagtgctaagttttgaccgagagaggcaacgagagtatacactgtca
gtcacggctacggaccaagcacaggagcccctcatcggcatctgtcagatcactgtcctc
attgctgaccagaacgacaacgaccccaagttcgagaacagccgctaccaatacttcctg
cgagaggacacaccggttgggactagcttcctgagggcggcggctcacgacgacgatcag
ggcaccaatgcggccatcacctactctctgtcccaggaaaacccagcttactttcacatc
aaccccagcacaggatggatctacgtcaaccagcctatctcacagacatcacggatcagc
cagcagatcatcgctactgatggagggagtcggagcagctcggtcgacctcactgttatc
atcaccaatgttcacaaccagcccccgcagtgggaacaggcggaatattgggtcacaatc
ccggagaacactccacgcgacagcaaaatagtgaccatcaaggcaacgtccccgcttggt
gaccccagggtgacttataacctggaggaaggtcaggttcccgagaccaacatgcctgtg
cgcttctacatcaagcctaaccggagggacggttctgcttctatcttggtggcagagaat
ctggactatgagaccacgcgtttctttacgctccgagtgcgtgtgcagaacgtggcggct
gtaccgctagcttccttcaccactgtctatgtcaacgtcacagatgtgaacgacaacgtt
cccttcttcatgtcatccacgtatgaggcaacggttccagagggtgcagagattggcaca
tcagtagctcaggtctcagcctctgacttggactctggtctccatggcatgattaactac
gtcattctgaaggatcaaagtggcgactcgcagttcttcagcattaattcctacacgggc
atcatccacacccgggccacctttgaccgcgagcagaaaggctcctacttgatcgaggtc
cagtctcaggacagctccgagtcggcccgacccggtcagcagggccaacccaacacagac
acagcctatgtgagggtttttgtcacggatgtaaatgacaatgctccggctttctctcag
cctgtatatgagatcagcgtggaggaagacaaggaagtgggtttcgtggtcattaccgtt
acagctaacgatgaagatgaaggtgccaatgccaaactacggtaccagattacctccggg
aacaccatgggcacgttcgatgtggagccagaggttggcacaatcttcattgcccagcgg
ctagactatgagcaggtgcagcgctacgagttacggctggtcgcgtcggacggaaaatgg
gaaaaccagacaatggttgtcattaatgtcatcaaccagaatgatgaggcaccccttttc
actcagactgagtaccacggcagtgtcatggaggaacttacagatcttcctgtccttgta
ctagaggtctcagctacagatccagatcaagaggcagaccagcgtgcggtccgttattct
ctccacgggcagggagctggtagcgaattcaccatagacgagatgaatggtaggatcttc
gtgcaacgccgcttagatcgtgaggttcgctcggcctggcaattccttgtacttgccacc
gatgagaatggggcaggtcttaccgggtttgctgatgttttagtcgacgtgctggatatc
aatgacaatgcacctgttttcctatgtgcaacggacaactgctttttggggcacgtgcct
gagaactccccagcagacacttccatcatggagatgcgggccactgacctagatgatcca
aaagctggcaagaacgctatcctgacctatagaattgtgcagaatgtgcgcaatgaaatc
aatctcaacctcttctccatcaacccagccacgggcaccatctacactgttctgcgctct
ttggacagggaagtggtggatcgatatcttgttgtggtggaagctcgtgatggaggagga
ctttcaggaacaggaacagccaccatcgtagtttccgacgtcaatgaccatcctccagtg
ttcacccagagggtctacatggcctcaatgccagaaaacttggacatcaacagcgaggtg
gtggtagtggctgccaccgatggggatgaaggtgagaattcagtcatgacgttcagcatc
attggtggagatgaagatcgtaaattcttcatcgagacagacaaggtaaaccgccgtggc
attgtgagactgaagaagaagattgactttgagaagccacatgagcgcacattcaacctg
actgtcaaagtggaggatgctgacttctttagcctggcttactgcatcattcaggtggaa
gactccaatgaccacgctccagtcttcttcccacagttctacgaggcaggatccatgttt
gaagacgtcccagtgggcaccatcgtggcacaggtgacagccgtggatctggactctggc
caaaatgggaggtttacatacagcattgccccagaatccgatccctttcaacaattcctg
gtggataagagcggttgggttgtagttgctgactctctagacagggaaaaggtgtcccaa
cataggcttataatcctggccacagacatgggcagccctgctctgaccggctctgccatt
gtgttagtgaccgtacaggatgtcaatgacaacggaccagagtttgaggctccatatcag
cccgttgtgtgggagaacactgttgctccacaagtcgttcacatgaatgactcatctgtt
ctgttgcatgctattgacagagactcttcatccaatggagggcctttttccattcgtctt
ttgatgttgacctctgatgttactaatttcaacttgactgatctgcggaatggcagtgcc
atgataaccgctctccgcagctttgaccgggaacagcagaagcggtatcttctccccatc
ctgatgattgacagtggctctccaccaatgagctccaccagtacactaaccgtcataatc
ggagataaaaatgaccatccccatgcacctggacacagcgagttcatagtttacaactta
cagggtacactccacacgacggtacttggacaggttcaatcccctgaccttgatgattgg
agcgagaaggtttacaagttcgaaggcaaaccccccaggcagttcagcctgaaccagaac
agcggtcagctgagcatccgggagggcacagcagctggatcctacagcctgcaggtgagg
gtggcagataagagctggcccgacgtcacctcatcggccgaggtcacggtgatggagctg
gaagaggaggcgctgaggaatgctgggtccatcagactggccaacttgactgcaaatgag
tttttccgagcatcaaccaatgaggagagccgatacactcgcttccgccgcctcttgtcc
gagctcttccagactgatatggagaatgttgatgtcttcagcctggctagtggcagccag
ccagctcagcatcacctcagcgtgtggtttgccgcccatggctccccatactacaagccg
gagaagctccacggctacgtctccatgcacaaagctaagttggagtccgtcctgggtgtg
tccattctacaggtgggggtggacgagtgcgcctatgcagcctgcggtcagactggtggc
tgctttagcaaggtgacattcagtgacacccctaagacactgaacaatgggaacgtctct
ttggtgtctgtctcagccaaagcgagcgctcagtgtggctgcatcgctcgagaggccatt
cacctgcactgctcctcgtactcacaaaacccttgcctgaacggaggcacctgtgtggat
agtgaactaggatacaggtgtaaatgtccccctatgtttgatgggccagaatgtcagcaa
accaaacacagtttcctcgggaatggctatgcttggttccctcccataaggccttgcttc
cagagccacatctctctagagttcattacagaggcagccaatggcctgctgttctacaat
ggcccaataggaacacctcagcccagagaaaaagaggactttattgctctggagctgaaa
aatggagttcctacgctgagtgtgaatcacggctctgggactctgacactgcagctgccc
gcgacagcaactgtcatggaccgccgctggcatcacctcgacattatcagcgatggcaag
actgtacagatgattctggactactgctctggtgccatggtgaatgaggtggaaggcctg
ggattagagatgtctgagactgatcagtcggtgtgcaaggcctctggagagacaccaggc
agtgaaaggtttttggacatctaccagcctcttcagttgggtggggttaaagagacacac
tcaccccgtaaattacaccccaattacaaaggatttgtgggatgtatgaggaaccttgtg
gtggacagtcaggtgtacgacctcaacagtccagcagagagcgagaacagtgccccagga
tgtgccctaacggatggtgtgtgtctgactgctggaggaccctcctgtggggttcatggg
aaatgcttgggggaatggggctccttcagctgtgattgccatcctggatacagcgggcac
aagtgtgacaaagcacttcctgagtggtcatttgagaaggacagtgtgttgaggtaccag
ctgagagggttaggaagtccacgcaggacccaagctcacctcctgctgagaacacgctct
tccacgggcagtctgctcagcatggcttcacgggacaccaatgagttcattatcctggag
atagtagatgggtacctcactgttcgtgctaaccttggggacggcactcaccatctcaaa
ttaacaggccagcgtgtgaaccacggccagtgggtcttggtcagccttcatcgccatgac
aacatctttaccctgcgactggagcagggcgggggttcacgagaggtcacggaggtcctg
ggtcagaagaaggaaataatagttcacccctccagtgtgtttctgggaaacagcgccact
ccagacacgcagggagactttcagggctgtatgcgtgatgtacggctgaacggtcactct
ctgctactggatggtcagggcacagagttcagtactatactggagcggcatggggtcgtg
cccggctgccactctgacgcctgcagtgccaaaccctgcctgagtccactgttctgcaca
gacctgtggaggaaacacgagtgcaggtgtccagccaatcaggttgcagtggtggatgag
gtcacaggtattttgcattgcgccccctccccctgcggccccaccacatgtcgtaacggt
ggcacctgccttgctgactccaccaagagctaccagtgccgctgtccagagggcttcagg
ggccaatggtgtgagatcggccaaatcaaagcccttcgtctcgccccgctcggtccgagc
tccatcctagccatcagcatgtgtctgctcgtctttttcgccgtgctcgtggcagtgacc
gtatggaatcagaagggcagtcggaataagttccgcaagcgaggtgtgtaccacatccca
gcggagcacgagagctgggaggacatccgggagaacatcctcaactacaacgaggaggga
ggaggagagcaggaccagaatgcctatgacatcaccgagctgaagaggccgctgtgttcc
agcttgtcccagtcctcttcctgcaccaccgcccccctcatcaagtcgtcccagggctct
caggaggaggtccacccctgtggaaacatcaccaacggagccacccttccctaccaccac
aacgccagctgcggcggtcactgcgccatggacttcaagagctacgtgtcgcgcatcatc
tgggaggccgacaacgacagcctggcgttccccatggacacctaccacgtgtactccatc
gagggaacgggctcctgcgcgggcagcctcagctctctggggtccgccatctccgaggag
ggcttcagctacgactccctgcagcactggggctccaagttccaaggcctgatcgagctt
tatcgcagacccgagctggccgtcccatacatggacacggtgcaaagccaaagccaggaa
tag
DBGET
integrated database retrieval system
