Pimephales promelas (fathead minnow): 120462579
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Entry
120462579 CDS
T08155
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120462579 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
120462579 (acin1b)
03015 mRNA surveillance pathway
120462579 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120462579 (acin1b)
03041 Spliceosome [BR:
pprm03041
]
120462579 (acin1b)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120462579 (acin1b)
Spliceosome [BR:
pprm03041
]
Complex C
Other components
EJC/TREX
120462579 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
120462579
NCBI-ProteinID:
XP_039507100
LinkDB
All DBs
Position
Unknown
AA seq
1249 aa
AA seq
DB search
MAESEDVTLDGKPLHSLRVADLKTALEQRGLAKSGQKNALIKRLKGALMLENLQRTSNQH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREATEADEKQSPAGPEEDDHMS
KGSTSFLPEKHHIGSIHLSVNQAGGGGLPQDPGVMGSHRLDTGPVPVSQELPDTKAGRMW
HPSFLQGHDEGATPSPPRAVASLSVRVVGQPERQGLPIMMPRSQEREGTAPVEAGPAHSV
LQLSRSAACSQVDSNDDDEEDDDDDDDSGDNDEWGPSSRVKKDFRAPPVHPPAAAAAPQR
SRRKLQPPQHIPPQPQPVHQPPLQLRQPTPPPSPPPELSFPLPDTPKQSPHDQDEPAGIA
EDAAPGAGMVSPPSLKRQESSSSSRSSSPEPPSTRRPGPLSLLVQKMESEGVFGAQKVGM
EGEREGEMEVEVQEGGKPAAQDSAQQLLGSEVSIPVPTMTPAQHDAQNSELQKEKDGEKE
NKKVDETSAPFRLTSPTTFPPKRKPIFSEVPPPESFKSPSKPQVSVLTTAPKRSEDIDME
IEASTEMAESKHKGVKQMKVLEKEALKPAEASKKALKSAHATEEGEIDKTRESSLREKSP
ERRASTSSQSSSSDTDSESSSSRSSSSPSQEKSIPPSQKKDEKEKRRDVEEKKKAQSFRE
VKQEALSEPAGQVAMELEGRSHSESALQQSDQQGAESSDSHPEESSTAKSFAARKISLSS
KTEIASSESEPVGGASRKRRWGSSTAVTAKKPSISITTESLKTLIPDIKPIQEAVVELHP
DESRLSVDEDSSGPREREEPEEDQGLKIRRTVTQIVPSDGHENGQKEMEEEEDDEEEPKW
TGGEKEMHKKQESSPDACIETQEGDSKKVTPNDSLVRRSISQQKSGVSITIDDPIRTGRQ
LSPPRGKTSKIIHVCNLVRPFTLGQLKELLNRTGTLVEEGFWIDKIKSHCYVTYSNIEEA
AATREALHGVKWPASNPKVLRVDFCEQDELDFHKGIVSSDRVGHDTQASGRPAAHPPLPP
PNHEKEKDRERERDGGATAVRDQWAERERAMERRERTRSEREWDRDKVKDFGKEDRNDKT
RRSRSRDRRRRERGKSKEKRVEKKDKPEEPPVKLLDDLFHKTKAAPCIYWLPLTDEQATQ
RALERAERKKEREKRRQELQEEEVKKREEWRGRAKGRDREGGNTGGPGAGVVRRSTEGER
DRGKERERERGREAEQRRDGHRARGSNSKPAGGSRRSQSRSSTSRDRRH
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaagcgaggatgttacgttagacggcaaaccgcttcattcgcttcgtgtggcg
gatttaaaaaccgccctggagcaaagaggactcgccaaaagtggacaaaaaaatgcactt
attaaaaggctgaaaggggctcttatgttggagaatctccaacgaacatcaaaccagcac
attggtcttcagcccaactctcagattggggaggagatgagtcagaacagctttataaag
cagtacctggcaaaacagcaggagcttctccgacagagactggagagagaagcccgggag
gccactgaggcagatgagaaacagagtcctgctggccctgaggaggatgaccacatgtcg
aagggtagcacttcatttctcccagagaagcatcacatcggaagcattcatctgtctgtc
aaccaggcgggtggtggagggttgccacaggaccctggggtaatgggatcacacaggttg
gatacagggcctgttcctgtgtctcaagaattgcctgacactaaagctgggaggatgtgg
catccttcgttcctccaaggccacgatgagggcgcaacaccctcccctccacgagcagtt
gcctccttgtctgtgcgcgtggttggacaaccagagcgtcaaggcctgccaatcatgatg
ccccgttcccaagagagagagggaacagcgccggttgaagcaggtcctgcccattcagtg
ttgcagctcagccgttctgcagcttgttctcaagttgatagcaatgatgatgacgaggag
gatgatgatgatgacgacgacagtggtgataatgatgaatggggcccttcctcacgtgtg
aaaaaggacttccgggctcctccagtacaccctccagctgcagctgcagccccccaaaga
tctcgtcgaaagcttcagccacctcaacacatccctccccagccacaaccagtccaccag
ccgcctctgcagctccgtcaacccactcctcccccatcaccacctccagagctgtctttc
ccactaccagacactcccaaacagagcccacatgatcaagatgaaccagccggcatagca
gaagatgctgctccaggggcaggaatggtctctcctccatccctcaaaagacaggagtcc
agctccagttctagatccagcagcccagaacccccatccacacggagacctggtcccctt
agcctgctggtgcaaaaaatggagtctgagggcgtgtttggtgcacagaaggtagggatg
gagggagagagagaaggagaaatggaagttgaagtgcaggagggtggcaaaccagcagca
caagactccgctcagcagcttctcgggtcagaggtgtccataccagtacccacaatgacc
ccggctcaacatgatgcgcaaaattctgagttgcagaaagagaaagacggggagaaagaa
aataagaaagtagacgagacctctgcaccattccgtttgacatcacccacaactttccca
cctaagagaaaaccaattttctcagaggtcccaccacctgagtcatttaagtcaccctcc
aaacctcaggtgtcagtccttaccacagcgccaaagcgctctgaagatattgatatggag
atagaggcctctacagaaatggctgaatcaaaacataagggggtcaaacaaatgaaggtt
ctggagaaagaggcacttaaaccagcagaagcaagtaaaaaggccctaaaatcggcacac
gctactgaagaaggagaaatagataaaacgagagaaagttcactgagagaaaaatctcct
gaacgacgcgcatcaacgtcaagtcagtcatcatcatctgatacagattcagaatcatcc
tcctctcgttcttcaagctctccttcacaggaaaagtctatcccaccaagccaaaagaag
gatgagaaagagaaaagaagagatgttgaagaaaaaaagaaggctcagtctttcagggag
gtaaagcaggaagctctctctgagcctgcaggccaagttgctatggagctggagggccgc
tcgcattcagagagtgctctgcaacaatctgaccaacagggggcagaatcaagtgactcc
caccccgaggagagctccactgcaaaatcgtttgctgcccgaaagatctccctgagcagt
aaaaccgagattgcatcatctgagtcagagcctgtgggcggagccagcaggaagagaagg
tgggggtctagtacagcagtcaccgccaaaaagccgtcaatcagcatcaccactgaatcg
ctgaagacactgattccagacatcaagcccatacaggaggcggtggtcgaactgcaccca
gacgagagccgtctctctgtggacgaggactcatctgggcctcgtgagcgagaggaacca
gaagaggatcagggtctcaagatcagacgcacagtgacacagattgttccgtctgatgga
catgagaatgggcagaaagaaatggaagaggaggaggatgatgaagaagaaccgaaatgg
acaggaggagagaaggaaatgcataagaaacaggagagctcccctgatgcttgcatagaa
acacaggaaggtgattccaagaaagttactcccaatgattcgttggtgcggcgctccatc
agtcagcagaaatcaggagtatccataactattgacgaccccattaggacaggtcgccaa
ctgtctcctcctcgtggaaaaacctccaaaatcatacacgtatgcaacctggtgcgaccc
ttcaccttagggcagctgaaggagttgttaaatcggactggtacattggtggaggagggt
ttctggatcgataagatcaaatctcactgctatgtcacatactccaatatagaggaagca
gcggccactcgagaagcactgcacggtgtgaaatggcctgcgagtaatcccaaagtgcta
cgggtggatttttgcgagcaggatgagttggacttccataaaggtatcgtgtccagtgac
cgtgtaggtcatgacactcaagcctcaggccgccctgccgcacatccgccactcccacct
ccaaaccacgaaaaagagaaggacagagaaagagagcgagacggaggggctacagctgtg
agagaccagtgggccgagagagagcgagcgatggagaggagagagaggactcgttctgag
cgggagtgggaccgggataaagtgaaagatttcggtaaggaagaccgaaacgacaaaacg
agaaggtctcgatcacgggaccgaagacgcagagagagaggcaagagcaaagagaagaga
gtggaaaagaaagataaaccagaagaacctcctgtaaaacttcttgacgacctgttccac
aaaactaaagcagctccctgtatatactggttacccctcacagatgaacaggcaacacag
agagctctggagcgtgctgagcgcaaaaaggagcgagagaagaggaggcaggaactccag
gaggaagaggtcaaaaaacgagaagaatggaggggtagagcaaaaggccgtgacagagag
ggagggaacacgggcggaccaggagcaggtgttgtgagacgttcaactgagggagagaga
gacagaggaaaggaaagagagagagaaagaggtagagaggcagaacagaggagagatggc
cacagagcccgcggtagcaactccaaacctgcagggggcagcagacgctcacagagccgt
agcagcacctccagagacagacgccactga
DBGET
integrated database retrieval system
