Pimephales promelas (fathead minnow): 120462900
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Entry
120462900 CDS
T08155
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120462900 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120462900 (hbs1l)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120462900 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
120462900
NCBI-ProteinID:
XP_039507534
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETVEEAE
YEEEEEEMPTSPTITSTLDPLKQGQLFSCLDHMREVLGDSVPDSSLTQAALKYDCDPHRA
LDFILTEENANTHAPPVRTNAQPEPTTTAAPQKGALFSPSHDSIKTVSSAHSGKPLKRDG
AKVRDAPESRVEAEVVPKVARMTVSGKKQTMGFDVRSPEENGVVASSVRRGQSPEVTAAP
TTETPSKTGVMTEDPTATTPSRPAGKSKQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKS
TLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFE
TDSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVR
SLGVTQLAVAVNKMDQVNWQQERFQEIISKLGHFLKQAGFKDSDVYYIPTSGLSGENLTT
RSKVADLTAWYTGPCLLEQIDAFKPPQRSVEKPFRLCVSDVFKDQGSGFCVTGKVEAGFI
QTGDKALVMPPNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINIGCIFCDPKEP
IRACTRFRARILLFNIELPITQGFPVLLHYQTVSEPATIRKLVSILHKSSGEVLKKKPKC
LSKGQNAVVEIQTQRPVALELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgccacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
ttgtacgggcagtcagtggaggatgactactgcatctctcctgccactgctgcacagttt
atctattcacgccaagactcaaggcaggctcgacatgtagagaccgtggaggaggcagaa
tatgaggaggaggaagaggagatgccaacctctccaaccatcacaagcacactagatccg
ctaaagcaaggtcagttgttttcctgtttggatcacatgagagaagtactaggagactca
gttccagactcctcactgactcaggcagctcttaaatacgactgcgaccctcaccgggcc
cttgatttcattctaactgaggagaacgccaatacacacgcccctcctgtcagaaccaac
gcacagcccgagcctaccaccacagctgcaccacagaaaggagccttattttctccatca
cacgacagtattaagactgtatcaagtgcacattcaggcaaacccctgaaacgagacggt
gcaaaagtacgggacgctccagagagtcgtgtcgaagcagaggttgtccctaaggttgcc
cggatgactgtgtcaggcaagaagcagaccatgggctttgatgtgcgaagcccggaagaa
aatggcgttgttgcttcatcggttcgcagagggcaaagtccagaggtcactgctgcacca
accacagaaaccccatccaaaacaggggttatgactgaagaccctaccgctacgacccca
tctcggccagctggaaagagcaaacagcagctcaacatccgtgccgaactggagaaaaga
caaggaggaaaaccgttactcaatctggtggtcataggtcatgtagatgctggtaagagc
accctcatgggtcatctgttgtatctgctggggaacgttaataagagaaccatgcataaa
tatgagcaggaggccaagaaagctggcaaggcctcgttcgcctatgcgtgggtactggat
gagaccggagaggaaagagacagaggagtgaccatggatgtgggcatgacaaagtttgag
acggactcgaaggttgttactctgatggacgcaccaggacacaaagacttcattccgaac
atgatcacgggggcggcacaggcagatgtggctgtgttagtcgtagatgccagccgtggg
gagtttgaggccgggtttgaggcaggggggcagacccgcgagcacggcctgctggttcga
tccctcggagtcacacagcttgctgttgctgtcaacaagatggaccaggttaactggcag
caggagaggttccaggaaatcatctctaagctcggtcactttctaaagcaggctggtttt
aaggattctgatgtgtattacatccccaccagtggcctatcaggagagaatctgaccact
aggagcaaagtagcagaccttacagcctggtacactggaccatgtctgctggaacagata
gatgccttcaaacctccccagaggtcagtggagaagccgttcaggctttgtgtctcagac
gtcttcaaagaccagggctctggattctgtgtgacggggaaggttgaggctggcttcatt
caaacaggagataaagctctggtcatgcctcctaatgagacctgcactgttaaagggatc
actctccatgatgaagcattagactgggcagctgccggtgatcatgtcagtctaactgta
acaggcatggacatcatcaaaataaacattggatgtatattctgtgaccccaaagagccc
atcagagcctgcacaagattcagagcaagaattcttctctttaatatagaactccccatc
acgcaaggcttccctgtgctgttgcattatcagactgtaagcgaaccggccactattagg
aagttagtcagtatattacacaagagcagcggagaagttctcaagaagaaaccaaagtgt
ttgagtaaaggacagaacgcagtggtggagattcaaacgcagaggcctgtggctctagag
ctctataaggactataaagaactggggcggttcatgctgagatatgtgggctccaccatt
gctgctggagtcgtcacagagatcaaagagtaa
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integrated database retrieval system
