Pimephales promelas (fathead minnow): 120462929
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Entry
120462929 CDS
T08155
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120462929 (tarbp1)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120462929 (tarbp1)
Enzymes [BR:
pprm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
120462929 (tarbp1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
120462929 (tarbp1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120462929 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
120462929
NCBI-ProteinID:
XP_039507567
LinkDB
All DBs
Position
Unknown
AA seq
1584 aa
AA seq
DB search
MSNFLINTLLSHYPDPEDLINNLCWPSSSRPEIEEIEALTILIKELSNKSQEERFICKVQ
SVIWDQCMSLLKMISSADDGGKDLLSSVCGLFAVCVSTCQTDDVSEQVSHGLLQVLMTRD
DANNETGRLDVDVAIEVTAVLLSSISYDRDIIFRTLSCTLCCVKDLSDSIVSKIIVRIWF
TILKSCHKEAESEVLHQIWEDLLSWHQRDQTESVSARVLLCLTALSDHLYSWETSQNRPD
PRRSQRFFRAIQAGLTHKDSVTRKRALYLLTRCVALAEIKKEDVFTSVEPHTDEILFRWM
PEQQHLLREFWEDFALVLETLEENQIHVIRPVLKRIDVLVETTATDIQGGLFSPSWLLCV
YQRMFHSENKAVMKEGVNHLLELKALHHSAFALAFSQFVIGPLMDVLAESALYHRAPQQN
IKDCPELGVKLQIFMVNFFSSLPEENRGSVLLQIIQRLGSRQWCAVPLLFLSQALSCLPP
CPLLGSDGLNAFREVMRCTMITHQVLLRGASQCFLLHAALCLTDVSAVSLDEIFGFLAHF
RADESLCRGTALWKELCNWLQTNEGRFLLTDGDLGSSELRSKVASIFSYVQQRLNTFLAV
PANSDQKGSLPDPAEAELVARAVLLTADLQKTRDEEPGLELLLQPLLDVLRRLSTNVYLV
LHKTDKSLQLMLRLLQLHRRRSDTEQENEDVVAVALKTHMLSVVDSVQEFLLRRLSGELK
ELCDVERSELYLSVLRELVLTYSTVSWYGLNLQQNYIPKLTTHCLRILNEPSEQNPSVPG
QVQRAVSMGTLALLCDMADQGVLKSQSEAMRSLHSLTDYFYPSSSSSSSSQHLNQTLLKP
TTVTLGHPEDGLLLKDWGRIVAQFIGDQWTCLSFLQKCTGTVRAPEAPEVPEVLRAAVDA
LALLPGHLVLPVLDFMASVLPQQVVQCEESLCVEVICASWKVVQALSTNPHDFWSTLLGF
VRLAFDHGLLQLTEEQNPSITACIQQILSELMELAQVRSGVFNVLIQHCCETWLPAEGVQ
SDAVFSTALLHLDILTEACVYGPVFRRDQRLVQEVQSYVEQLGDSCAANTAVSSDNRDDQ
FPRVCALAFLCRLNPSNRLHQRLMEELVLRLLRKDAEISKSKVRYYSNSIQHRVKNRVWQ
TLLLLLHKLRPEFVSECVLSHVCEAGFCSNQASVKYLIEWNLILILHLNPSHIQNLWNCF
SLEHEKTKTSICTFLSVLVHLNVLFPKLQEKEVQWRRAVEVSLQWCFSHNFSVRLYALLA
LKRVWELEDAHVLMEESLGGLTTVVQACLQQAEAMQNTGNAMKNWSRIQEHFFFSAFHPI
RDYSVETIFQTFPSLSELADDEWIPPWKFESFVVFPMCAALPLKNSVRDLCELQPGDWIQ
QDKGVLDQDERWAEVQKKITPWKLSVQEQEPELMAQQRAARLGKLTSNLLVVASLIDKPT
NLGGLCRTCEIFGAKALVLDSLRHSNDKQFQALSVSSELWLPMLEVKPAELSDYLQRKKR
EGYWVIGVEQTSNSQSLQDYTFPERSLLLLGNEREGIPANLLQLVDVCVEIPQHGVTRSL
NVHVSAALLVWEYTRQHLGQNPAV
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattttttgataaacaccctattgtcccactatcccgatcccgaggatttgatc
aataatttgtgctggccaagctcatcacgccccgaaatagaggagattgaagctttaact
attttgatcaaggagctttccaataaatcacaagaggagcgctttatttgtaaggtgcag
tcagttatatgggatcaatgcatgtcgctactgaaaatgatctccagtgcagatgatgga
ggtaaggatcttctcagctctgtctgtggactctttgcagtctgtgtcagtacctgtcag
actgacgatgtatctgagcaggtaagtcatggtcttctgcaagtgctgatgacgagagat
gatgccaacaacgaaaccggcaggttagacgtagatgttgccatagaagtcacagcagtg
ctgttatctagcatctcatatgatagagacatcatcttcaggactctatcctgcaccctt
tgctgtgtcaaagatctctctgactccatagtttcaaaaatcatagtacggatctggttc
accatactcaagtcctgccataaagaggctgaatcagaggtcctacatcagatatgggag
gatttactgtcctggcatcagagagaccagaccgaatcagtgtcagctcgggttctgttg
tgtctcactgctctctctgaccacctctactcttgggaaacctctcagaaccggccagac
cctagaagatctcaaaggttttttagggcaattcaggccgggttgactcacaaggacagt
gtgacccgcaaacgggcgctttacctgctcaccaggtgtgtggcactggcagagatcaag
aaagaagatgtgtttaccagcgtggaaccccacacagatgaaatcctgttcagatggatg
ccagaacaacagcatttactgagagaattctgggaagattttgctctagtgttagagact
ctagaggagaaccagattcacgtgattcgacctgttctcaaaaggattgacgtgcttgtt
gagacgacggcaacagatattcaaggtgggctgttttctccgtcctggctgctgtgtgtg
tatcagcgcatgtttcacagtgagaacaaggcggttatgaaagaaggagtcaatcacctg
ttagagctgaaagcactgcatcattctgcatttgctttggcattctcacagtttgtaatc
ggccctctcatggatgttcttgcagagagcgctctctatcacagggcaccacagcagaac
atcaaagattgtccagagctgggagtgaagctccaaatctttatggtgaatttcttcagc
agtttgccagaagagaacagaggttcagtgttgctgcagatcattcagcggttgggttca
cggcaatggtgcgcagtcccgctgctctttctgtcccaggccctgtcctgtctgcccccc
tgtcctttactgggatctgatggactcaacgcattcagagaagttatgcgctgtactatg
atcactcaccaggttcttttgagaggagcttcacagtgttttctgctccatgccgctcta
tgcctgacagatgtgtccgctgtgtctctagatgagatatttggtttccttgcacatttt
cgagctgatgagtctctatgtcggggtacagcactttggaaggagctgtgtaattggctc
cagactaatgaaggccgttttcttctgactgacggggatttaggctcttctgaacttcgc
agtaaagttgcttctatattcagctacgtccagcagcgactgaacacctttctcgcagtt
ccagccaactcagatcaaaaaggaagtctacctgatccagctgaggccgagctggtggcg
cgggccgttctgcttacagcagacctgcagaagaccagggatgaggaacctggtctagaa
ctgcttctccagcctctactggatgtcttacggagacttagcactaatgtctatctggtg
cttcacaagacggacaagagcctgcagttaatgttgcgcttgctgcagctgcatcgcaga
cgctccgatacagagcaggagaacgaagatgttgtggctgtcgctttgaagacgcacatg
ctgtcggtggtggattcagtgcaggagtttctgctgaggaggttgagtggggaactgaag
gagttatgtgatgtggagaggtctgaactttatctctcagtattaagggagctggttctc
acttattccactgtttcgtggtatggcttaaatctgcagcagaactacatcccaaaactc
accactcactgcttgaggatcctcaatgaaccttctgaacagaatccctctgtgccaggg
caggttcagagagcggtcagtatgggcacacttgcgctgctgtgtgacatggctgatcaa
ggtgtcctgaagtcccagtctgaggccatgagatcacttcactcgctgactgattatttc
tacccttcatcatcatcatcatcatcatcccagcatctcaaccagacattactgaagccc
acaactgtgacacttggccatccagaagacggcctcttgctgaaggactgggggcgaatt
gtggcccagtttattggcgatcagtggacatgtctgagtttcctgcagaagtgtactggg
accgtccgggctcctgaagctcctgaagttcctgaggtcctgagggctgcggtggatgct
ctggcattattgcctggccatctcgttttgccggtgctggacttcatggcatcagtcttg
ccacagcaggtggtgcagtgtgaagaatctctgtgcgttgaggtcatatgtgcatcatgg
aaagtggttcaggctctgagcacaaaccctcatgacttctggtccacactgctgggattc
gtgcgcttagcttttgaccatgggcttctgcagctcacagaggaacagaaccccagcatc
acggcctgcatacaacagattttgagtgagcttatggagttggctcaggtccgatcaggg
gtgtttaatgttctgatccaacattgttgtgagacgtggcttccagcagagggtgtccag
tcagacgctgtgttcagtacggctctcttacacctcgacatcctgactgaggcctgtgtg
tatggcccagtgttcagaagagaccaaaggcttgttcaggaggttcaaagctatgttgag
caattgggtgatagttgtgcagcaaacacagctgtcagcagtgataacagagacgatcag
tttcctcgagtgtgtgctttggcttttctctgccgcttgaatccatctaatcgtctccac
cagcgtttgatggaagagctcgtgctgcgactactgaggaaggatgctgagatttcgaaa
tccaaagtacgttactatagcaactccatccagcacagagtgaagaaccgcgtgtggcag
acgctgctgctgctactgcataaactaagaccggagtttgtgtcggagtgtgtgttgagt
cacgtgtgtgaggccgggttctgcagtaaccaagcatccgtcaagtacctgatcgaatgg
aacctgatcctgatcctccatctgaacccgtctcacatccagaacctgtggaactgtttc
agtctggagcatgagaagacaaaaacaagcatttgcacttttctctctgtcctcgtgcac
ctgaacgtcctcttcccgaaactgcaagaaaaggaggtgcaatggcgtagagctgtggag
gtgagcctgcagtggtgtttcagtcataacttcagcgttcgtctctatgccctgctcgcc
cttaagagggtgtgggagctggaggacgcccatgtcctcatggaggaaagcctgggtggg
ctgaccacggtagtccaggcctgtttacagcaggctgaagccatgcagaacacaggaaat
gcaatgaaaaattggtctagaatccaggagcatttcttcttcagtgcttttcacccaatc
agggattacagtgttgagacaatattccagacctttcccagcctctcagagttggcagac
gatgagtggattccaccatggaaatttgagagttttgttgtcttcccgatgtgcgccgcc
ctgccattgaagaacagtgtgagggatctctgtgaactccagcctggtgactggatccag
caggacaaaggtgttttggatcaggacgagcgctgggcagaagttcagaagaaaatcacc
ccgtggaagctgagcgtccaggagcaggagcctgagctcatggcccagcagagggcagca
cgcctgggcaaactcaccagcaacctcctggtggtcgcatcactcattgacaagcccacc
aatctgggcggtctgtgcaggacatgtgagatctttggggccaaagctctggttctggac
agtttgcgacacagtaatgataaacagttccaggcactcagtgtgtcatctgagttgtgg
ctgccaatgcttgaggtgaagcctgcagagttgtcagattatctgcagcggaagaagaga
gagggatattgggttataggcgtagagcaaacatccaacagccagagtttacaagattac
acttttcctgagagaagcctccttttactcggtaatgaaagggaaggcattcctgcaaac
ctgctgcagctggtggacgtgtgtgtggagattcctcagcacggtgtcacccgctccctc
aatgtccacgtgagcgccgccctgctggtgtgggaatatacacgccagcatttaggacaa
aaccctgcagtctga
DBGET
integrated database retrieval system
