Pimephales promelas (fathead minnow): 120463627
Help
Entry
120463627 CDS
T08155
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120463627 (pdzrn3a)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120463627 (pdzrn3a)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120463627 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
Sina_ZnF
zf-TRAF
zf-RING_2
zf-C3HC4_4
zf-RING_5
PDZ_Tricorn
Prok-RING_4
zf-rbx1
U-box
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
120463627
NCBI-ProteinID:
XP_039508810
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MGFDLDRFEGPVDPDLICKLCGKVLEDPLSTPCGHVFCAACALRWFSKVSSCPALCQKIT
TKELNHVLPLKNLILKLDVKCEHRERGCNRVMKLQHLSEHAETCDFSPVRCRNEGCDAVL
ILKDVASHMRERCEHRAVEVCQGGCGLALSLKERSDDHSCLQALKTHSCLLQTKALRLEE
ELKSQSLSFSKRERSLLSKLSALHCELHITALTFQKKITEYKSRIDSLSNRCLLPLEKGE
DTRSLKVTLHRTSGSLGFSIIGGRLCEEPEEHEDFSDGIYISKIVENGAAEKAGLHVHDR
IIEVNGRSLSITTHDQAVEAFQAAKDPIEVKVLRRPVHKTLNTHEPAQRVDNSTQTNVTM
KYMKHIETMAKLPSPPAPLCMAVLDSFHSPSQCQMARRDSTYSTDLHDGVQKDIESSGLE
YEEVDLQRKTTNDKLGLMLCYKTDDETTAIFISEIAPEGIAAKDGRLQEGDQIIQINGVK
IQSHEEAVTLLTEAESKNVTLLVARPESQDVSWLEKDRNNLADDLHTGMLEQQHNKSTHE
EDGGTTDTATLQSNHHEKDSGVGRTDESTRNDESSEQDNLGDDQNSLCDTLPENHKTYSQ
GTFESGDMHLSNDSFLLVDNGDSGNFLGIPGMACERFQKQLELKCLVNGSGLQGFLEHDN
TLYGKRVSVDCDDQEVQMLNEELLNIELECLSIIRAHRLQTEGDDRQAKKCCTKHLTEQI
NTKVDQDLINNQVDYEGSTSAYNTGESCWSLHPALESDSPDSQRMAPGDKSKGSPMHRRN
STTACSKHQLSPIQEISPTKSLPGDPEVTNQGGRKQSKKRNPSLHHSSHKKAYIPAHAQH
YQSYMQLIQQSSAVEYVQSQVSLASLETTPTKARPKMGWRVKIRGDGTRYITKRPIRDQL
LKERALRIREERCSATTDDDATSELKLGRYWNKEERKQHAALAREQRQRRELVKQCHLEN
KGQTGAMNDKEKPDIIQLSRKKMLKRRNKRIFDSWMTIQELLTHGTKSTDGNRLYNSFLS
VTTV
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgatttagaccgctttgagggtcccgtggacccggacttaatctgtaaactg
tgtgggaaagttttagaggatcctctcagcactccgtgcggacatgtcttctgcgccgcg
tgcgctctacggtggttctccaaagtcagcagctgtcctgccctgtgccaaaaaatcacc
actaaagagttgaaccacgtcctgcccctaaaaaacctaattctcaaactggacgtcaaa
tgcgagcaccgtgaacgaggctgcaaccgggtaatgaagctccagcatctttcagagcac
gcggagacgtgcgacttctctccggtcagatgcaggaatgaaggatgcgacgcggtgctc
atcctgaaggatgttgcttcacacatgcgggagagatgcgagcacagggcggtggaggtc
tgtcagggtggatgtggactggcgctgagcctcaaggagaggtcggatgaccacagctgt
ctccaagcacttaagacacacagctgtctcctccaaaccaaagcgctgcgtctggaggaa
gagctgaagagtcagtccctgagcttcagtaagagagagaggtctctcctgtccaaactc
tccgcactccactgcgagctgcacatcaccgcgctcacatttcagaagaaaatcaccgag
tacaagagcaggattgactcgctgtcaaacagatgcctgctgcctcttgagaagggagaa
gatacgaggagccttaaagtcaccctacacagaacatcaggatctcttggattcagtatc
atcggaggaagattgtgtgaggaaccagaggagcatgaagatttcagtgatgggatctat
atatctaagatagtggaaaacggagcagctgagaaggccggactgcatgttcatgacagg
atcattgaggtaaatggaaggagcctttccatcacgacccatgaccaagcagtagaggct
ttccaagcagccaaagaccccattgaggtcaaggtactgcgcaggcctgtgcacaagact
ctcaatactcatgaaccagcccaaagggtggacaacagtactcagaccaatgttacaatg
aaatatatgaaacatatagagactatggcaaagttaccgtcacctccggcaccactgtgt
atggctgtgctggacagtttccattcaccctcacagtgccaaatggcaagacgtgactcg
acttactccacagacttgcatgatggcgtacagaaagacattgagagtagtggactggaa
tatgaggaagtggatctgcagaggaaaactactaatgataagcttggcctgatgttatgt
tacaaaactgatgacgagacgactgcaatttttattagtgagattgccccagaaggaatt
gcagcaaaggatggcagactccaggaaggagatcagatcatacagatcaatggagtgaaa
atccagagccatgaggaggcagtgacacttctgaccgaggcggagagtaagaatgtgacc
ctcctggtggctcgaccagaaagtcaggatgttagctggttggagaaggatcgaaacaac
ttggcagatgacttgcacacgggcatgctggagcaacagcataacaagagcacacatgaa
gaagatggaggcactactgatacggcaaccttacagtccaaccatcacgagaaagacagt
ggcgttggccgcactgatgaaagcactcgtaatgatgaaagctcagagcaggacaactta
ggagatgaccagaattccctttgtgacactctcccagaaaaccacaagacgtatagtcaa
ggcacttttgaaagtggggacatgcacttaagcaatgactccttccttttagttgacaat
ggagacagtggaaacttccttggcatacctggaatggcatgtgaacgtttccagaaacag
cttgaactgaaatgcctggtcaatggtagtggtcttcagggatttctggagcatgacaac
acactatatggaaagagggttagtgtagactgtgatgatcaggaggttcagatgcttaat
gaggagttgctgaacattgagctggagtgcctgagtatcatacgagcacacaggcttcag
actgaaggtgatgatcggcaagccaaaaaatgctgcaccaagcatttaactgagcaaata
aatactaaagtcgatcaggacctcattaataaccaggttgactacgaaggctctactagt
gcttacaacaccggagagagctgttggagcttacatcctgctctggagtcagattctcct
gactcccaaaggatggctcctggagacaagagtaaaggttctcccatgcatagacgcaac
tctacaacagcttgctccaagcatcaactctctcctattcaggagatcagccccaccaag
agtttacctggagatccagaggtcacgaatcaggggggaagaaagcagagtaagaaaagg
aacccttcattgcaccattcttcacacaagaaagcctacatcccagcccatgctcaacat
taccaaagctacatgcaacttatccagcagagttcggctgtggagtacgtccagagtcaa
gtcagcttggccagcctagaaaccactcccactaaagcccggcccaagatggggtggaga
gtaaagatccgtggcgatggaacaaggtacatcaccaaaaggcccatcagggatcagcta
ctgaaagagcgtgctttgcgcattcgggaagaacgctgcagcgcaactacagatgacgat
gcaacgagtgaactaaagctgggtcgatactggaacaaggaggagcgcaaacagcatgcg
gcactagccagggaacagcgtcaacggcgtgaactcgtcaagcagtgccacttggagaac
aagggacaaacaggagcaatgaacgacaaggagaagcctgatattatccagcttagccgt
aaaaagatgctgaaaaggaggaacaagaggatatttgacagctggatgaccattcaggag
ctgctgacacatggcacaaagtccacagatgggaatagactctataattccttcctttct
gtgactacagtgtaa
DBGET
integrated database retrieval system
