Pimephales promelas (fathead minnow): 120463711
Help
Entry
120463711 CDS
T08155
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120463711 (clstn1)
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Cadherin related
120463711 (clstn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
TylF
Cadherin_C_2
EphA2_TM
DUF7502
FAM176
Motif
Other DBs
NCBI-GeneID:
120463711
NCBI-ProteinID:
XP_039508939
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MRIRGAVGLLLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALDKDAPLR
YAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKEHTFTIQ
AYDCGEGPDGDNMKKSHKATVHIRVNDVNEYSPVFKEKSYKTTVIEGKKYDSILKVEAVD
ADCSFQFSQICSYEIVTPDVPFSIDKDGNIKNTEKLNYSKDRMYKLTVTAYDCGKNRASE
DVLVKINIKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQANIMLETNH
IGKGCDRDTYSEKSLHKLCGASTGTVELLPAPSTSANWTVGLPTDNGHDSDQVFEFNGTQ
AIKVPEGVVSTTLKEPFTISVWMRHGPGSREKETILCNSDKTEMNRHHYSLYVHNCRLVL
LLRQEPTESENYKPAEFHWKLDQVCDKEWHHYVLNIEFPAVTLFVDGATFEPFLVTEDYP
LHASKIETQLTIGACWQDLSGHDNDTETLSEPLTGGSARMTQYFRGNLAGLMIRSGKLEN
KKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSLSLEGDDIESFEKVMQHISYLNSR
QFPTPGIRHLRVTTTVKCFNEETCISVPDSEGYVMVLQPEEPKISLSGIDHFARGAAEFE
STEGVTLFPELRIVSTITREVEVEAETETEGEDDPTVQETVVSEEIMHNLDTCEVTVVGD
DLNGDHESLEVDLAQIQQRTLEMSSSNVGMVITGVNTMANYEQVLHLIRYRNWHTEALFD
RKFKLVCSELNGRYISNEFKVEVNVIHTANPMDHANNAMVQPQFINQVQHASVDLSGHNL
VNTHQASVVPSAATVVIVVCVSFLVFMIILGVFRIRAAHQSTMRDQESGKENEMDWDDSA
LTITVNPMETYEDQHSSEEEGDEEEEESEDGEEEDDITSAESDSSEDEGGEQEDQQGSSR
QQQLEWDDSTLNY
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgcggatccgtggggcagtcggtctgcttttaggactattatgcgcggtggaggcagcc
aaagtaaacaagcacaagccatggattgagaccacgtatcatggtatcgtaacggaaaat
gacgacaaggttctcctggaccctccgctgatagccttggataaagatgctccgttgcgc
tatgcagagagttttgaggtgaccttcaccaaagaaggggagatctgcggcttcaggatt
cacgggcagaacgtgccgttcgaggcggtggtgttggataaatccactggagagggcgtg
atccgggccaaggataaactggattgtgagctacaaaaggagcacaccttcaccatccag
gcctacgactgcggagagggacctgacggcgacaacatgaagaaatctcacaaggctacc
gtccacatccgagtgaatgacgtaaacgagtactctcctgtgttcaaagagaagtcctac
aaaaccacagtgatcgagggcaaaaagtacgacagcatcctgaaggtggaggctgtggat
gctgactgctctttccagttcagtcagatctgcagttatgaaattgtcacccccgatgtg
cccttttctattgacaaggatggcaacatcaagaacacagagaagctgaactacagcaag
gaccgcatgtacaaactcacagtgaccgcgtacgactgtggtaaaaaccgggcatctgag
gacgtccttgtcaaaatcaacatcaagcccacttgcaaaccaagctggcaaggatttaat
aaaaggattgaatatgagcctggcacaggaagtctagccctgttccccagcatgcacctg
gaaacctgtgaggagccaatcacctccattcaggccaacatcatgctggagactaatcac
atcggcaagggctgcgacagagacacttactccgaaaaatctttacacaagctctgcggt
gccagcactggcactgtggagctgctgcctgctcccagcacctctgccaactggaccgta
ggcttgcccactgacaatggccacgacagcgaccaggtgttcgagttcaacggcacccag
gccatcaaggtcccggagggtgtcgtgagcaccaccctgaaggagcccttcaccatctca
gtgtggatgagacatggacctggaagcagggagaaagagaccatcctctgcaactctgac
aagaccgaaatgaacaggcaccactattcgctgtacgtacacaactgtcgtcttgtgctg
ctgctgcgtcaggagcccaccgagtccgagaactacaaaccggctgaattccactggaaa
ctcgatcaagtgtgtgataaagaatggcatcactacgtgttgaacatcgagttcccagca
gtaactttgtttgtggatggtgccacctttgagcccttcctggtcacggaggattaccct
ctgcatgcctccaagatcgaaacccagctcaccatcggcgcctgctggcaagacctctca
ggacatgacaatgatactgagacactctcagagcctttgacaggtggcagcgcccgcatg
actcagtacttccggggcaacctggcgggactcatgatccgctccggcaaactggaaaac
aagaaggttattgactgcctgtacacctgcaaggaaggtcttgacgtgcagcttccggag
gaagtggcctctgctgtgaaggtggagtttaaccccaaccagtcctctctgagcctggag
ggagatgacattgagagctttgagaaggtcatgcaacacatctcgtacctgaactcccgg
cagttccccaccccaggaatccgccacctgcgtgtcaccaccactgtcaaatgcttcaat
gaggagacgtgcatctccgtgcctgactctgaaggctacgtgatggttctccagccagag
gagccgaagatcagcctcagtgggattgatcattttgcccgtggagcagctgaatttgag
agcacggagggtgtcacgctcttccctgagctgcgtatcgtcagtaccatcacccgcgag
gtggaagtggaagctgagaccgaaaccgagggcgaggatgatcccacagtgcaagagacg
gtggtatctgaggagatcatgcataacttggacacgtgcgaggtgactgtagtgggagat
gatctgaatggagatcatgagagtttagaggtggatctggcccaaatccagcagagaact
ctggagatgagctcttctaacgtgggcatggtcatcacaggggttaacaccatggcaaac
tatgaacaggtcctgcacctgattcgctacaggaactggcacacagaagccctgtttgat
aggaaatttaaacttgtctgctctgaactcaatggccgctacatcagcaatgaatttaaa
gtcgaggtcaacgtgatccatacagcaaacccaatggatcatgctaacaatgctatggta
caacctcagttcattaaccaagtacagcacgcttcagtggacttgtctggacacaacctg
gtgaacacacatcaggcctcagttgtccccagtgctgccaccgtcgttattgttgtatgt
gtgagcttcctggtgtttatgatcatcctgggagtgttccgtatccgtgctgcccaccag
agcacaatgagggaccaggaaagtggcaaagagaatgagatggactgggatgactcggcc
ctcaccatcactgtcaacccaatggagacttacgaggaccagcacagcagcgaagaggaa
ggagatgaggaagaagaagagagcgaggacggagaggaggaagacgacatcaccagcgcg
gagtccgacagcagcgaagacgagggaggcgaacaggaagaccagcagggttcgagcaga
cagcagcagctggagtgggacgactcgaccctcaactactga
DBGET
integrated database retrieval system
