KEGG   Pimephales promelas (fathead minnow): 120465123
Entry
120465123         CDS       T08155                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm04115  p53 signaling pathway
pprm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120465123 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pprm04121]
    120465123 (cop1)
Enzymes [BR:pprm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120465123 (cop1)
Ubiquitin system [BR:pprm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120465123 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120465123 (cop1)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX zf-C3HC4_3 Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st zf-RING_10 zf-rbx1 WDR90_beta-prop_4th UvrD-helicase zf_C2H2_10 Sina_RING Prok-RING_4
Other DBs
NCBI-GeneID: 120465123
NCBI-ProteinID: XP_039510679
LinkDB
Position
Unknown
AA seq 694 aa
MSSTRQQQSGGAAGSVPGTSSGGMSCSSGSGAGGANSGGSGAQNGNSSGNGVSSRTLGSV
AEGQSSRLASSSRKRPLYNGLINPYEDKSNDFVCPICFEMIEEAHMTKCGHSFCYKCIRQ
SLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSEEKRLKRDHPNGTKWQVFQDVL
GADQENMDLANVNYILEYLLQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQKEL
NFLEEDIKRVEEMSGMYSPVSDMDPNLDSTVPQFEAPSPAPSSSIIDPPEYIQPPFGASS
QGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDDSRTVNQLDDFMECLSKFTR
YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDIH
YPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF
NLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVH
YYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHIN
EKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVS
AVCWRALPDGESNVLIAANSQGTIKVSCTAKQTE
NT seq 2085 nt   +upstreamnt  +downstreamnt
atgtcaagcactcggcagcagcagtccggcggtgcagcggggtccgtccccgggacgagc
tctgggggaatgagctgcagcagtggcagcggagccggtggagcgaacagcgggggcagc
ggcgctcagaacgggaacagctctggcaacggagtgtcctcgcggactctgggatcggta
gccgagggacagagttctcgactggcttcgtcaagcaggaaaagacccctgtacaacggt
ctgatcaatccctatgaggacaagagtaacgattttgtatgccctatatgttttgagatg
atagaggaagctcacatgacaaagtgtggacacagtttctgttataaatgtatacgacag
agtttggaggacagcaacagatgcccaaaatgcaattatatcattgacaatgtggatcaa
ctttaccccaacttcttagtgaatgaactgatcctgaaacaaaaacagagatctgaagag
aagcgtctgaaacgagatcatcctaatggaaccaaatggcaggtttttcaagatgtcctt
ggtgcagatcaagagaatatggatttagccaatgtcaactatatattagagtacctgttg
caaaaaaagaaacaactggaggcggaatcacaagctgctcagcgccagatcttaatggaa
ttcctgaaagaagccagaagaaataaaagagagcaactggagcagttacaaaaagaactg
aactttttggaagaggatatcaaacgagttgaggaaatgagcggtatgtactcaccagtg
agtgacatggaccccaatttagatagtactgtacctcagtttgaagctccctcacctgca
ccgagcagtagcataatagaccccccagaatacattcagcccccttttggtgcaagctcg
cagggtaaaagacaaacatggtacaacagcactctggcatcacggcggaagagactgacg
gcacactttgaggatctagagcagtgttatttctccaataggatgtctcgcataacggat
gacagcaggactgttaaccagctggatgatttcatggagtgtctttcaaaatttacccgt
tacaactctgtgaggcctctggccaccctctcctatgctagtgacctctataatggctcc
agtattgtgtccagcattgagtttgaccgcgactgtgattactttgccattgccggtgtc
actaagaaaattaaagtgtttgaatacggcactgtgatccaggatgctgtggacattcat
tatcctgtcaacgagatgacatgtaactccaaaattagctgtatcagctggagtagctat
cacaaaaatctgttggctagcagtgactatgaggggactgtcattctttgggatgggttc
acaggtcagaggtcaaaggtctaccaggagcatgaaaagcggtgttggagtgtcgatttc
aacctcatggatcccaagctcttagcatcgggatctgatgacgcaaaagtcaagttgtgg
tccaccaacctggacaattcagtagccagcattgaagcgaaggccaatgtatgctgtgtc
aagtttagtccatcctctcgatatcaccttgcctttggttgtgcagaccactgtgtgcac
tactatgacctgagaaacactaagcagcccatcatggttttcaaaggccacaggaaagca
gtgtcctatgccaagtttgtcaacggagaagaaattgtgtctgcctcaacggacagccag
ctgaaactctggaatgtgaacaagcctcattgtttgcgctccttcaaaggccacatcaac
gagaagaactttgtgggtctggcatctaatggagattatgtagcatgtggaagtgaaaac
aactcactgtacttgtactacaaggggctctctaagacgctgctgactttcaagtttgac
actgtgaagagtgtgttggacaaggacaagaaagaggacgacaccaatgaatttgtcagt
gcagtgtgctggcgagctctacctgatggggagtcaaatgtgctgattgcagccaacagt
caaggaacaatcaaggtgagttgtactgcaaaacaaactgaatag

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