Pimephales promelas (fathead minnow): 120465388
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Entry
120465388 CDS
T08155
Name
(RefSeq) transcription factor Sox-9-A-like isoform X1
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120465388
Transcription factors [BR:
pprm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120465388
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120465388
NCBI-ProteinID:
XP_039511041
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MNLFDSYLKMSDEQDKSLSDAPSPSMSEDSAGSPCPSGSGSDSESTRAEQHLREFKKDEE
DKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKSKPHVKRPMNAFMVWAQAARRKLADQ
YPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQ
TDGEDGEQTHISPNAIFKALQQADSPTSSMGEVHSPADHSAGQSQGPPTPPTTPKTDVPS
SKPDLKREGRPLQEGIDFGAVDIGELSSDVISNLEPFDVNEFDQYLPPHGHPGIPVSNSG
QAYSSGYGLGSQAGSAHAWMPKHSLSSEPPQQRTQIKTEQLSPGHYSEGSPQHASYATFN
LQHYSSPYPSTTRPQYEYEHQSPASSYYSQYPAFSYMSPSQRPIYTPIADTAGVPSVPPP
HSPQHWEQQQPVYTQLSRP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcttcgactcctacctgaaaatgagcgacgagcaggacaagagtctgtccgac
gcgcccagcccgagcatgtccgaggactcggccgggtctccgtgtccctccggctcgggc
tcggacagcgagagcacccgagcggagcagcacctgagagagtttaagaaggacgaggag
gacaagtttcccgtgtgcattagggacgcggtgtctcaggttctgaaggggtacgactgg
accctggtgcccatgcctgtccgagtcaacggctccagcaagagcaaaccgcacgtcaag
agacccatgaacgcgttcatggtgtgggctcaagccgcgcgcaggaagctggcggatcag
tacccgcacctacacaacgccgagctcagcaaaacactcggcaaactctggagactactg
aatgagggagagaagcgtccgtttgtggaggaggccgagcgcctcagggttcagcacaag
aaagaccaccccgactacaagtaccagccccggcgaagaaaatcggtgaagaacggccag
accgacggcgaggacggcgagcagacgcacatctctcccaatgccatatttaaagccctg
cagcaggccgactctccgacgtccagcatgggagaagtgcattccccggcagaccactca
gcaggtcagtcccaaggtccccccacgccccccacaacccccaaaacagacgtgccgtcc
agcaaaccagacttgaagcgtgaaggccgtcctctgcaggagggcatcgactttggcgcc
gtggacatcggcgagctgagcagcgacgtcatctccaacttggagccgttcgacgtcaac
gagttcgaccagtacctgcctcctcatgggcacccggggatcccggtctccaacagtggc
caggcgtactcctccggctacgggctcggatctcaggccggatcggctcacgcctggatg
cccaagcactcgctgagcagcgagccgccccagcaaaggactcagatcaagacggagcag
ctgagtcccggccactacagcgaggggtccccacaacacgccagctacgccaccttcaac
ctgcagcactacagctccccctacccctccaccacccgcccgcagtacgagtacgagcac
cagagccccgccagctcctactacagccagtaccccgccttcagctacatgagccccagc
cagaggcccatctacacccccatagcggacacggcgggcgtcccgtcggtgcctccacca
cacagccctcagcactgggagcagcagcaaccagtctacacccagctgtcccggccctga
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