Pimephales promelas (fathead minnow): 120466676
Help
Entry
120466676 CDS
T08155
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120466676 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120466676 (sf3b1)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120466676 (sf3b1)
Spliceosome [BR:
pprm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120466676 (sf3b1)
Complex B
120466676 (sf3b1)
Complex C
U2 SnRNP specific factors
120466676 (sf3b1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120466676 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
120466676
NCBI-ProteinID:
XP_039511171
LinkDB
All DBs
Position
Unknown
AA seq
1315 aa
AA seq
DB search
MAQIAKTHDDIEAQILEIQGMKAALAEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDDEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQHLSKEEREIRLQMVEKAKSG
DLKAVNGSAAAQAAVAKRKRRWDQTADQTPSNSTPKKMSSWDQADGSSETPGHTPGHTPS
NSRWDETPGRAKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGASSSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFP
EGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQTEDRSMKQVNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVFNDEKNSFVRYELDYFM
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatcgccaaaacacatgacgacatagaggctcagatcctggaaatccagggg
atgaaagccgccctggcagagggagctgaccagggtgtcgggcttgattccactggatat
tatgaccaggagatctatggaggcagtgacagccgttttgccggatatgtgacttcaatt
gctgccaatgagcaggaagaagatgatgatgaagattcttccactagtctgcttggtcag
aagaaaccaggatatcatgcaccggttgcaatactcaattccattcctcagtcagatgag
cagtatgatccctttgctgaacacagaccacagaagatttcggaccgcgaggacgagtac
aagaaacgcagacaaaagatgatcatctccccagagcgccacgacccgtttgctgatggg
ggcaaaacgccggaccccaagatgcaggtcaggacgtacatggatgttatgaaggagcag
catctgtccaaagaagagagagagatcaggctgcagatggtagagaaagcaaaatctgga
gatctgaaagcagtgaacggctctgctgctgctcaggctgctgtggccaaacgcaaacgt
cgctgggaccagacagctgaccaaacccccagcaactccacacccaaaaaaatgtccagt
tgggaccaggcagatgggtcttctgagacacctggacatacaccaggacatacgccttcc
aacagtcgttgggacgagacacctggccgtgccaaaggtagtgagaccccaggagccacc
ccaagcacccgtatgtgggagcccacaccgagtcacacgccagccggagctgccacacct
ggtcgagacactcccggacatgctactcctggacatggaggcgcctcttccagcgtgcgc
aagaaccgctgggatgagacaccaaagacagagagagagacacctggtcatggcagtggc
tgggctgagactcctcgtacagatagaggagatgagtcagtgggtgagacgcccaccccg
ggtgcaagcaaaaggaagtcgagatgggatgaaacaccagccagtcagatgggctcttca
actcctttgctaacccctggaaaaacgcctctgggaacacctgccatgaatatggccaca
cccactccaggtcacctaatgagcatgaccccagaacagctgcaggcttggcgctgggag
cgagagattgatgagaggaaccgcccattgactgatgatgaacttgatgccatgtttcca
gaaggatacaaagtattgcccccaccagcaggctatgtgcccatccgcacccctgcacgc
aagttagccgccactcccacccccatcggaggaatgactggcttccacatgcaaacggag
gacagatctatgaaacaagtcaatgaccagccctctggaaacctgcctttcctcaagcca
gatgacatccagtactttgacaaacttttggttgaagttgatgagtccaccctcagtcca
gaagaacagaaggagcgcaagatcatgaagcttcttctgaagatcaagaatggcacacct
cccatgagaaaggctgctcttcgtcaaatcacagataaggccagagagtttggtgcagga
cccctatttaaccagatcctgccactgctgatgtcccctacactggaggaccaagagcgt
catctcttggtgaaagtcattgatcgtattctctacaaacttgacgacttggttcgacca
tatgtccacaagattcttgtggtgattgagcctttgctgattgatgaagattactatgct
agagtagagggtagagagatcatttccaacttggcaaaggctgccggtctggccaccatg
atctccaccatgaggcctgacattgacaacatggacgagtatgtgagaaatacgacagct
cgtgcttttgccgtcgtggcgtctgccctgggcattccatctctcctgcctttcctcaag
gctgtttgcaagagtaagaaatcctggcaggctcgtcacacaggcatcaagatcgtacag
cagattgctattctcatgggctgtgctatcctgccccatctccgaagcttggtggagatt
atcgagcatggtctcgtggatgagcagcagaaagtgcgaaccatcagtgctctggctatc
gctgccctggctgaagctgctacgccatacggtatcgagtcatttgattctgtgctgaaa
cctctttggaaaggtatcaggcaacacagaggcaagggtcttgctgccttcttgaaagct
attggatacttgattcctcttatggatgctgaatatgccaactattacaccagagaagtg
atgcttatcctcatccgagagttccagtctcctgacgaggagatgaagaagattgtcctc
aaggtggtgaagcagtgctgtggcactgatggtgtggaagccaattacattaaaacagag
atcttgcccccattctttaaacatttctggcagcaccgaatggcgttggataggcgcaac
tacagacagttagtggacactacagtggagctggccaataaggtaggcgcagctgagatt
atctcccgtatcgtggatgacttgaaggatgaagctgagcagtacagaaagatggtgatg
gaaactattgagaaaatcatgggcaaccttggtgctgctgacatcgatcacaaactggag
gagcagcttattgatggtatcctgtacgcctttcaagaacagaccactgaggactctgtg
atgctgaatggcttcggtacagtggtgaatgctctgggtaagagagttaaaccatacttg
cctcagatctgcggtacagtgctgtggcgtctcaacaacaaatccgcaaaggtccgtcaa
caggctgctgacctaatttctcgcacagcggtggtcatgaagacttgccaagaggaaaag
ctcatgggccatttgggtgtggtgttgtatgagtatctgggagaagaatacccagaagtg
ttgggtagcattcttggagcacttaaagctatcgtcaatgtcattggtatgcacaagatg
accccacctatcaaagacctgcttccacgtttgactcccatcttgaagaacagacatgag
aaggtgcaggagaactgtattgatctagtgggcagaatcgctgacaggggtgcggagtat
gtgtctgccagggaatggatgcgtatctgttttgaattgttggagttgttgaaagcccac
aagaaggccattcgtagagctactgtcaacacattcggctacatcgccaaggccattggt
cctcatgatgtgctggccacgctgctcaacaatctgaaggtgcaggagcgtcagaaccgt
gtgtgcacaacggtagccatcgctatcgtggctgagacgtgttcgccattcaccgtgctt
cctgcattgatgaacgagtaccgtgttcctgagcttaatgttcagaacggtgtcctgaag
tctctgtctttcctgtttgagtacattggtgaaatgggcaaggattatatctatgctgtc
acacctctgttggaggacgctttgatggatagggatctcgtacacaggcaaacagccagt
gctgtggtgcagcatatgtctcttggagtgtatggctttggctgtgaagattctctcaat
catttgctcaactatgtttggcccaatgtcttcgaaacgtctccgcatgtcatccaagct
gtaatgggggccctcgaaggtctgcgggtggcgattggaccctgccgcatgctgcagtat
tgcttacagggtttgttccatcctgctcgtaaagtgcgtgatgtatattggaagatctac
aactccatctatatcggctcccaggacgcactgatcgcacattatcctcttgtcttcaac
gacgagaagaactcgtttgttcgctacgagctggattacttcatgtga
DBGET
integrated database retrieval system
