Pimephales promelas (fathead minnow): 120466802
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Entry
120466802 CDS
T08155
Symbol
col18a1b
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120466802 (col18a1b)
00535 Proteoglycans [BR:
pprm00535
]
120466802 (col18a1b)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120466802 (col18a1b)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120466802 (col18a1b)
Proteoglycans [BR:
pprm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120466802 (col18a1b)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120466802 (col18a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Motif
Other DBs
NCBI-GeneID:
120466802
NCBI-ProteinID:
XP_039511357
LinkDB
All DBs
Position
Unknown
AA seq
1830 aa
AA seq
DB search
MRFSWGLTLLLILDMGPLNAFWWTSQGVTDGPTVDKDSSDSGMTSEDKDIGDVGSDIIDV
ARGIQGFVQNWDEDPTVKWNSAVTWIPDISSKDGHSKREESGVSLLQLIGSPPPEDITQA
PGPNRQIAYLFTKDTKTGQMARAHFPTHFYRDFSLVFHLKPTSDDAGVLFSITDSNQNIM
YVGVKLSAVEDGKRKVIFYYTEPDSDRSQEVASFEVAHQPQVWSRFSLAVNMDQVSFYED
CDTEPKVVKFERSPDDLELETNSRIFVGQSGTDDPDKYQGMISELRVVGNSRAAERQCDD
ADDDYNDGSGDNGSGIEDIMDVKHNLGDRDEKRMEGSGSGRPGSKGDRGPPGPPGPPGPP
GPQGPVTELIKSGNKSVVRMQGPMGPSGPKGSKGEPGKPGENSKLGSEGPRGSQGLPGSI
GPKGQKGQKGEGHQGPRGPPGPPGPPGPSISDKTTFGDMEGSGLQGLCCPSGPPGPPGPP
GPPGPDWGTGSELESSEIGPTGPPGQNGTFGRPGLPGRPGKPGPPGPPGQKGDCGELGEK
QSSSSAFSFFSNWFPSWETSGPQSNSLRANKESGVSLLQLIGSPPPEDITQAPGPNRQIA
YLFTKDTKTGQMALAHFPTHFYRDFSLVFHLKPTSDDAGVLFSITDSNQNIMYVGVKLSA
VEDGKRKVIFYYTEPDSDRSQEVASFEVAHQPQVWSRFSLAVNMDQVSFYEDCDTEPKVV
KFERSPDDLELETNSRIFVGQSGTDDPDKYQGMISELRVVGNSRAAERQCDDADDDYNDG
SGDNGSGIEDIMDVKHNLGDRDEKRMEGSGSGRPGSKGDRGPPGPPGPPGPPGPQGPVTE
LIKSGNKSVVRMQGPMGPSGPKGSKGEPGKPGENSKLGSEGPRGSQGLPGSIGPKGQKGQ
KGEGHQGPRGPPGPPGPPGPSISDKTTFGDMEGSGLQGLCCPSGPPGPPGPPGPPGPDWG
TGSELESSEIGPTGPPGQNGTFGRPGLPGRPGKPGPPGPPGQKGDCGELGEKQSSSSAFS
FFSNWFPSWETSGPQGPQGSSGILRQEGLTGLPGPMGPQGPQGPPGPPGPAFRITSDGKE
KEVALQYIPGVMGPPGPQGPQGRPGLPGTPGFPGIPGQKGDEGQRGREGISGLDGFPGKI
GLKGERGWKGDKGDPGRVAGPPGPPGPPGQIIYINGSFQEKEKYGIPGPQGEPGIAGRAG
FPGPMGPKGDRGEPGLPGDSIKGQKGEPGLIYDSSGSPIYMGGPAGQLAEPGLPGPRGPV
GPVGPPGPKGEIGLPGRSGRPGLNGKKGAKGDSGGGYGNGYQGPPGPPGAPGPPGPPGTP
ASVERFNGYDYGSSRVPFAIKGDKGERGASGIPGLPGLTTTFDIYTFKHEMKGEHGAKGE
KGEPGGGFYDPRHGGLQGPPGRPGPPGPRGESIRGPPGPPGPSGAPGIGYEGRPGSPGPP
GPPGPPASLLPGTYRPSQTISIPGPPGPPGPPGVPGYLSRVMVLRSFDAMAASTIQHPEG
TLIYVTDKKELFMREEDGVRKVLLGEYTPFQRGLDKQMEAGKSPQVVHYSQDYPTTSRPR
APPQPEAQYPVPHNPRYQPSYDPYHRHTDPQSLSPTDPRYSPSVDPIYQHHLDSRKHIHG
SHPDQSGYPDRRYERTHHLRPVIEEARLPAHTHTAGHALHLIALNSPQRGDMRDIRGVDH
QCFLQAQAIGLKGTFRAFLSSRLQDLHSIVRKNDRDLLPIVNLQDEELFSNWESIFNDSE
GRLNDDVRIYSFDGRDVLNDDAWPEKMVWHGSSTGGNRQTDSYCETWRTGSHAVTGMASS
LQDGYLIQQLPRGCDSSFIVLCIENSYTAE
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcagctggggcttgactctcctgttgattctggacatgggtcctcttaatgcc
ttttggtggaccagtcaaggtgtcacagatggccccacagtggacaaagacagttctgac
agtggaatgaccagtgaggacaaggacattggtgatgtaggttcagatatcatagatgta
gccagagggattcaaggatttgtgcagaactgggacgaggacccaactgtgaaatggaat
agtgctgtcacctggatacctgatatctcttcgaaggatggccattcgaaaagggaagag
agtggagtctccctgctgcaacttattggaagccctccgcctgaagacatcacccaggct
ccaggtccaaatagacaaatcgcttacctctttacaaaggataccaaaacggggcagatg
gcacgtgcccactttcccactcatttctaccgagacttctctcttgtgttccacttgaag
cccacctctgatgatgctggggtcctcttctccatcacagactccaatcaaaatatcatg
tacgtgggggtcaagctctcagctgtggaggatggtaaaaggaaagttattttttattac
acagagcctgattcagatagatctcaagaggtggccagctttgaggtggcacaccagcct
caagtgtggagtcgcttctctctggcagttaatatggaccaagtgtctttctatgaggat
tgtgatactgagcccaaggtggtaaagtttgagcgctctcctgatgacttggagctggag
acaaactccaggatctttgttggacaaagcggaactgatgacccagacaaatatcaaggc
atgatctcagagttaagagtggttggaaactcacgggctgcagagcgtcaatgtgatgat
gccgatgacgattacaatgatggttctggagacaacggaagtggaatagaggacataatg
gatgtaaaacataatttaggtgatcgtgacgagaagagaatggagggtagtgggtctgga
cgtcctggctccaaaggtgatcgtgggcctccaggaccacctggaccgcctggaccacct
gggccccagggtccagtaacagaattgataaaatcagggaataaaagcgtggtgaggatg
cagggtccaatgggcccatcaggtccaaaaggctcaaagggggagccaggtaaaccagga
gagaacagcaaacttggctctgaaggacctcgaggttctcaaggactaccaggttctata
ggacctaaagggcaaaagggacagaaaggagaaggacatcaaggccctagaggtccacct
ggacctcctggacctcctggaccctcaatttcagacaagactacattcggggatatggag
ggttctggattgcagggtttatgttgtccttctggtccacctgggcctcctggcccccct
ggccccccaggaccagactggggaactggatcagaattagagtcctctgaaattggcccc
actggtcctcctggacaaaatgggacctttgggcgtcctggacttccaggtcgacctgga
aaacctggtcctcctggtcccccaggccaaaagggagactgtggtgagctaggggaaaag
caaagctcctcctctgctttctcttttttctccaattggtttccttcctgggagactagc
gggccacagtctaattctctcagggccaacaaagagagtggagtctccctgctgcaactt
attggaagccctccgcctgaagacatcacccaggctccaggtccaaatagacaaatcgct
tacctctttacaaaggataccaaaacggggcagatggcacttgcccactttcccactcat
ttctaccgagacttctctcttgtgttccacttgaagcccacctctgatgatgctggggtc
ctcttctccatcacagactccaatcaaaatatcatgtacgtgggggtcaagctctcagct
gtggaggatggtaaaaggaaagttattttttattacacagagcctgattcagatagatct
caagaggtggccagctttgaggtggcacaccagcctcaagtgtggagtcgcttctctctg
gcagttaatatggaccaagtgtctttctatgaggattgtgatactgagcccaaggtggta
aagtttgagcgctctcctgatgacttggagctggagacaaactccaggatctttgttgga
caaagcggaactgatgacccagacaaatatcaaggcatgatctcagagttaagagtggtt
ggaaactcacgggctgcagagcgtcaatgtgatgatgccgatgacgattacaatgatggt
tctggagacaacggaagtggaatagaggacataatggatgtaaaacataatttaggtgat
cgtgacgagaagagaatggagggtagtgggtctggacgtcctggctccaaaggtgatcgt
gggcctccaggaccacctggaccacctggaccacctgggccccagggtccagtaacagaa
ttgataaaatcagggaataaaagcgtggtgaggatgcagggtccaatgggcccatcaggt
ccaaaaggctcaaagggggagccaggtaaaccaggagagaacagcaaacttggctctgaa
ggacctcgaggttctcaaggactaccaggttctataggacctaaagggcaaaagggacag
aaaggagaaggacatcaaggccctagaggtccacctggacctcctggacctcctggaccc
tcaatttcagacaagactacattcggggatatggagggttctggattgcagggtttatgt
tgtccttctggtccacctgggcctcctggcccccctggccccccaggaccagactgggga
actggatcagaattagagtcctctgaaattggccccactggtcctcctggacaaaatggg
acctttgggcgtcctggacttccaggtcgacctggaaaacctggtcctcctggtccccca
ggccaaaagggagactgtggtgagctaggggaaaagcaaagctcctcctctgctttctct
tttttctccaattggtttccttcctgggagactagcgggccacagggtccacagggttca
tcagggatcctaagacaggaaggtctgactgggctgcctggacccatgggacctcaagga
cctcaaggacctccagggccccctggacctgcattccggattactagtgatgggaaagaa
aaagaagttgctcttcaatacattccaggagtcatgggcccaccaggtccacaggggcct
caggggagacctggactaccgggcacacctggtttcccgggtattccaggccagaaaggc
gatgaaggtcaaagaggacgagagggaatctcagggttagatggctttccaggaaaaata
gggctaaagggggaaagaggatggaaaggtgacaaaggagatcctggtcgtgtggcagga
cctccagggccaccgggtcctccaggacaaattatctatattaatggcagttttcaggag
aaggaaaaatatggaattcctggaccacagggagaacctggtatagctggtcgggcaggg
tttcctggaccaatgggtccaaagggtgatcggggggaacctgggctaccaggagactct
atcaagggtcagaagggtgaacctggtctaatctatgactccagtggtagccccatttat
atgggagggcctgctggacagctggccgagccaggacttccaggaccacggggacctgtg
ggaccagtggggccacctggaccaaaaggtgaaataggattaccaggcagatcaggtcga
cctggtctaaatggaaaaaagggggcaaaaggtgattcaggtggaggatatggtaatggc
tatcagggaccccctggtccacctggtgcacctgggccacccggtcctcctggaactcca
gcctctgtggaaagatttaatggttatgattatggaagctcaagagttccctttgctatc
aaaggggacaagggtgaaagaggagcatctggcatacctggattgccaggtctcactacc
acctttgacatttatacatttaagcatgagatgaaaggtgagcatggtgctaaaggggag
aagggagaaccaggaggaggtttctacgaccctcgtcatggtggattacaaggtccacct
ggaagacctggaccaccgggtcctagaggtgaatctattagaggacctccaggtccccct
gggccttctggagccccaggaattggttatgagggtcgcccaggtagtcctggcccgcca
ggtccacctggaccaccggcatcattgctgccaggaacatacagaccatcacaaacaatc
agtattcctgggccacctggacctcctggacctcctggagtccctggatatttatctcgg
gttatggttttgaggtcttttgatgccatggctgcatcaactattcagcatccagaaggc
acgctaatctatgtaacagacaagaaagaactttttatgagagaagaggatggtgtcaga
aaagtcctgcttggagaatatacccctttccaacggggtctggataaacagatggaagca
gggaagtctccacaagtggttcactactctcaggactaccccactacctctcgcccaaga
gcccctccacaaccagaagcccagtatcctgtgccacacaatcccagataccagccatca
tatgacccataccacagacatacagatccacaatccctttctccaactgatccacggtac
tcgccatcagtcgacccaatttaccagcaccatcttgattccagaaagcacattcatggc
agccacccggatcagtctggctatcctgacagaagatatgaacgtacgcatcacctcagg
cctgtcattgaagaagccaggcttccagctcacacacacacagcaggccatgcactgcac
ctgattgctctcaactcaccccaacggggtgacatgcgggatattagaggtgtagaccac
cagtgcttcttacaggcgcaagcaattgggctcaaaggaacattcagggcttttctgtca
tcccggttacaggacctacacagtattgttcggaagaatgacagggatctgttacctata
gtaaatcttcaagatgaggaattattcagcaactgggagtctatctttaatgactcagag
ggcaggttgaatgatgatgtgcgcatctactcattcgacggtcgagatgttctcaatgat
gatgcctggccagagaagatggtatggcatggatcaagcactggtggaaacaggcaaaca
gacagctactgtgaaacatggcgaactggtagtcatgccgtcactggcatggcttcctct
ctccaagatggctacctaattcagcagttgccacgtggctgtgacagctcttttatcgta
ctgtgcattgagaacagctacactgctgagtaa
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integrated database retrieval system
