Pimephales promelas (fathead minnow): 120466918
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Entry
120466918 CDS
T08155
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120466918 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120466918 (parn)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120466918 (parn)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120466918 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
G_path_suppress
NCBP3
RRM_NFXL1
FMP23
RRM_1
Motif
Other DBs
NCBI-GeneID:
120466918
NCBI-ProteinID:
XP_039511544
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MEVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMDFLLFQFGICTFRYEQNQSTYITKAFNFYIFPKPFSRTSPDVKFICQSSSIDFLASQG
FDFNKVFRSGIAYLTREEESQLREQYEERRGQMNGAGPVSYTPPSGGGACSVPEDQRDFI
RSVEQKVDSLQNSCDQTLDLEPCTGFQRKLIYQTLNSKFPKLHVETLETEKKERFIQISK
VDDEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCAP
LPEELDDFKEVAMSVFPRLLDTKLMASTQPFKEIIGNTSLAELHKQLRAKPFRSPVTECP
EGLRSYDTSTEQLHEAGYDAFITGLCFISMANYLGTFLTPPKSHISARSKLLEPFYNKLF
LMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAFV
SLSQTEQVQIAMNTSQYAESYRIQTYAAYLQGRQKNTSSRRWAADGWADTPDTADASRLH
AVKRSISPSLEEQNHYSDSGWTHYSSGKKMKTDGGSSQTYVNVADSEGSCDWPRLQPEGG
ASVSPVHEEAEPEKSSANQSQGKRSRKHKKRNSDASETSPPTLFDVPKVW
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacgagacagaattttaaggaggttcttccagaggtgtgtaacgcggtgcaa
gaggcggacttcatctctatagacggagagttcacaggaatcagtgatgggccgtcagtc
agtgctctgaccaatggactggacacaccggaggagaggtacaccaaactgaggaagcac
tccatggacttcctgctcttccagttcggcatctgcaccttccgatacgagcagaaccag
tccacgtacatcacgaaggccttcaacttctacatcttccccaagcccttcagccgcacg
tctccggacgtcaagttcatctgtcagagctccagcattgacttcctggccagccagggc
ttcgacttcaacaaggtgttccgcagcgggattgcatacctgacgcgggaggaggagtct
cagctgagggagcagtatgaggagaggcggggccagatgaatggggcggggccggtgtcg
tacacgcccccctcgggaggaggagcctgcagtgtgcctgaggaccagagagacttcatc
aggagcgtggagcagaaggtggactctctccagaacagctgtgatcagactctggatctg
gagccgtgcaccgggtttcagaggaagctcatctatcagacgctcaactcaaagtttcct
aaactgcatgtggagacgctggagacggagaagaaggagcgtttcatccagatcagcaaa
gtggacgatgaggagaggaggaggagagagcagcagaaacagcagcgagagcaggaagag
ctgaacgacgccgtgggtttctccagggttattagagccatctccaaatctggtaagctg
gtggtgggccacaacatgctgctggacgtcatgcacaccatccatcagttctgtgcgccg
ctgcccgaggagctggatgacttcaaggaggtggccatgtctgtgtttcccaggcttttg
gacaccaagctgatggcgtccacgcagcccttcaaggagatcatcggcaacacgtcattg
gctgaactgcacaaacagctgagagcgaaacccttccgatcgcccgtcactgagtgtcct
gaaggcctcaggagttacgacacctccacggagcagcttcatgaagccgggtacgacgcc
ttcatcacaggactgtgcttcatctccatggcaaactacctggggacgttcctcactcct
ccaaagagtcacatctctgctcgctccaaactcctggaacccttctacaacaagttattc
ctgatgagggtcattgacattccctacctgaacatgagtggcccggacctgcagcccaag
agagatcacgtgctgtacgtcaccttccctaaagagtggaagaccagtgacctgtaccag
ctcttcagcgccttcggcaacatccaggtgtcgtggatcgacgacacgtcagcgttcgtg
tccctcagtcagacggagcaggttcagatcgctatgaacaccagccagtacgcggagagc
taccgcatccagacgtacgcggcgtaccttcagggccggcagaagaacacgtccagcaga
agatgggccgccgacggctgggccgacacgcccgacactgcagacgccagccggctgcac
gcggttaagaggagcatcagtccgtctctagaggagcagaatcattattccgacagcggc
tggactcactacagcagcggcaagaagatgaagactgacggaggctcctcacaaacgtat
gttaatgtggctgattcagaggggtcctgtgattggcccagactgcagcctgaaggcgga
gcctctgtgagcccagtgcatgaggaggcggagcctgagaagtcctcggccaatcagagt
caaggtaaacggagccgcaagcacaagaagaggaactcagacgcttctgaaacgtcaccg
ccgacgctcttcgacgtccctaaggtttggtag
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