Pimephales promelas (fathead minnow): 120466937
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Entry
120466937 CDS
T08155
Symbol
ddx17
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120466937 (ddx17)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120466937 (ddx17)
Spliceosome [BR:
pprm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120466937 (ddx17)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120466937
NCBI-ProteinID:
XP_039511577
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MRGSNSYGDRDRDRGRDRGARFGSSRVVQPPPKKFGNPGDRLRKKKWDLDQLPKFEKNFY
SEHPEVQHMSPYDVEEYRKRKEITVRGSGCPKPVTKFHQAQFPQYVMEVLLQHNFKEPTA
IQAQGFPLALSGRDMVGIAQTGSGKTLSYLLPAIVHINHQPYPERGDGPICLVLAPTREL
AQQVQQVAYDFGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLHDYVQ
INIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTR
RMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP
NSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDTGR
GGGGGGRMRYRGNNSSSNNPNMMYQDECDQRMSSASGGNKGSRSNNFSRDGRSGGSSRGD
RFSSSSYRDRSRDGRNNYNSGPSYNSEGGDQYQSYGGGGGGQYGSRGGGSHPGGGAGGQD
QAGPPQGLFGAPPPTPPQPGPGPQPLMAQQFPPPPQPVMGFMGPGPYPFASPQPLPPPPR
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaagtaactcgtatggagaccgagacagagatcgaggacgggacagaggggct
cgctttggatcaagtcgtgttgtccaacctccacctaagaagtttgggaatccaggagat
cggctgaggaaaaagaaatgggaccttgaccagctccccaaatttgagaagaacttctac
agcgaacacccagaggttcaacacatgagtccgtatgatgttgaagaatatcgcaagagg
aaagagataaccgtcagaggctccggctgtccaaagcctgtcaccaaattccatcaagct
cagttccctcaatatgtgatggaagtgctgctgcagcataactttaaggagcccactgct
atccaggctcaaggttttcctttggctctcagtggcagggacatggtgggcatcgcacag
actggctctggaaaaacactgtcttatctgttgcctgccatagtgcacattaaccatcag
ccatacccagagagaggggatgggcccatctgtcttgtgttggcaccgacacgtgaatta
gcccagcaggtgcagcaagtggcttatgactttggcaaatcatcccgaatcaagagtacc
tgtgtttatggtggagctcctaaaggtccacagatcagagatttagaaagaggtgttgaa
atctgcattgccacacctggccgtctgatcgacttcctggaggtaggaaaaaccaacctg
cgccgttgcacctacctggtgctagatgaggctgatcgtatgttggacatgggttttgaa
ccccaaatccgcaaaattcttgaccaaattagacctgacagacagactctcatgtggagt
gctacctggcctaaagaagtgcgtcagctggctgaagatttcctccatgactatgtccaa
atcaatataggagctctagaactaagcgcaaaccacaacatcctgcagatagtggatgtc
tgcatggaaaatgaaaaagacaacaagctgattcagctgatggaggaaatcatggctgaa
aaggagaacaaaaccatcatctttgtcgagacaaagaaacgttgtgatgaactgactcgc
aggatgcggagagatgggtggcctgcaatgtgtattcatggtgacaaaagccaaccagag
agggactgggtgctaacagagttccgcagtggaaaagctccaattttgatcgctactgac
gttgcctcacggggtctggatgtggaggatgttaaatttgtcatcaattatgactatcca
aactcttctgaggattatgttcatcgcattgggcgcacagcccgtagcaccaacaaaggt
acagcctacaccttcttcacacctgggaaccttcgacaggctcgtgatctggtccgtgtt
cttgaggaggctagacaggccatcaaccccaaactactgcagctggtggacacaggccgt
gggggaggtggaggtgggaggatgcgttatcgtggcaacaactcaagctcaaataacccc
aacatgatgtaccaagacgaatgtgatcagcgtatgagctctgcatcgggggggaacaag
ggcagccgcagcaacaactttagccgcgacggaaggtcaggtgggagcagccgaggcgac
cgtttctcctcttcttcttacagagatcgcagtagggatggacgaaacaactacaactca
ggaccctcctacaacagtgaaggaggtgaccaataccagagctatgggggtggaggaggg
gggcagtatggctccagagggggaggttcacatccaggtgggggagcgggagggcaagat
caggctggacctccccaaggtctgtttggagcgccgcctccaactcctcctcagcctggg
ccgggtccgcagccactcatggcacaacagttccctcctccaccacagcctgtcatgggt
ttcatgggtcctggcccatacccatttgcctcaccacaaccccttcctccccctcccaga
aagtag
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