Pimephales promelas (fathead minnow): 120467713
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Entry
120467713 CDS
T08155
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
pprm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120467713 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120467713 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120467713 (srsf5a)
Spliceosome [BR:
pprm03041
]
Common components
Common spliceosomal components
SR proteins
120467713 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
PH_35
Nup35_RRM_2
DUF4090
Motif
Other DBs
NCBI-GeneID:
120467713
NCBI-ProteinID:
XP_039512098
LinkDB
All DBs
Position
Unknown
AA seq
333 aa
AA seq
DB search
MAIFNVFTSVFTVSALRTHARDARNLLPLPSPLRVNTHINASARGRVPQSRDQRHFVLQA
EIALNHFINMSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDAD
DAVYELNGKELCSERVTIEHARSRRGRGGGPGMGGRFSPRFGGYRQSRNGGSRCDVPAMY
GPPVRTEHRIIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTNKNEGVVEFASHSDMKNA
IEKLDGTDLNGRKLKLYEDRKRNRSRSRSRSRSSSRSRSPSRSRTPERGSKRSRSRSVSR
TPEKNTSNRSPSRSPSPPRKQSRSRSASAESQH
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggccattttcaatgtgtttacgtctgtctttacagtctctgctttacgtacgcatgca
cgagacgcacgcaatctcctcccattaccctcccccctgcgcgtgaacacgcatataaat
gcttccgcgcgcggccgcgttcctcagtctcgagatcaacgccattttgtcctgcaagcg
gagattgccttgaatcattttatcaacatgagtggatgtcgcgtgttcatcggccgtctg
agccctcatgctcgggaaagagatgtggagaagttcttcaaaggatacggacgaatcagg
gagattaacctgaaaaacgggtttggctttgtggagtttgacgaccacagggacgcagat
gacgcagtgtacgagctgaatggaaaagagctgtgcagcgagagggtgactattgagcat
gcccgctctcgcaggggaagaggtggtggcccaggcatgggaggacgtttctctccgcgg
tttggaggctatcgccagtcccgcaatgggggttccaggtgtgatgtcccagcaatgtat
ggaccaccagtgcgcacggagcacagaatcattgtggagaacctctcctctcgaatcagc
tggcaggatctgaaggacttgatgaggaaggtgggagaagtgacctttgtggatgcacac
aggaccaataagaatgaaggggtggtggagtttgcttcgcacagtgatatgaagaatgcc
atcgagaagctggatggaacagatctgaatgggcgcaagctcaagctgtatgaggatcgc
aagaggaatcgtagcaggagtcgttcccgcagcaggagcagctcccgttcccgttcaccc
agtcggagtcgcacccctgagcgtggaagcaagcgctctcgcagccgctcagtcagtcgc
accccagagaagaataccagcaaccgctctccttcccgctctccgtctcctccgaggaaa
cagagccgctcccgatctgcctctgcagagagtcagcactga
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