Pimephales promelas (fathead minnow): 120468172
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Entry
120468172 CDS
T08155
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120468172 (tdrd12)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
120468172 (tdrd12)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120468172 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
DUF6643
Motif
Other DBs
NCBI-GeneID:
120468172
NCBI-ProteinID:
XP_039512759
LinkDB
All DBs
Position
Unknown
AA seq
1358 aa
AA seq
DB search
MLEIEIIKVEDPGCLWARVLRGAGVQPDSPEEYEHLRVQMNLFYHKVNMDLQKLKPAELK
LGLVCVVFSLALKSWCRAVVESVIEGSLDSQAWCLLVDHGDHIIVRANDVRTPLEKFLQL
PFRVRRFSLAGIRPMTLQVPVSGDTAELVPSSTWDSSATKYLHNLLQVSTLVEAVLCETL
AGCSAVELYLTINDTKICVNHELVAKKFACFVSEKSSVPDGNRNGDRVPVSLAWDIYSRP
QELLEMKGCCPVKASPAPEIPQNPQRTERRDDPQPQTESEPQKPQVSEEEHTHSPVKPQV
HKLARNAGTNTIGRGWRIRVEATGITTEESCAQTDVNKAQCMKFKLRSKQIPESVEEKRH
SPDRPEENGVASAPAGSSASCASDSSEEQKEASLPQEPNLDDQLASSRLMQFLNPDPLNP
DQESLDAKAARCDPGHLGVLVHSALRVEPCRNLARAPISEQFRKFLLRRKYNGPNVAESY
CWPAVARGFDTVLVSHSGDNPLSYIPPLLMLLQTVSVVSSLAARSGPVAVILCPGWEKVQ
TVLELLEDSRATHSLRPTSALLGLDQDEPKKFKIPRNCQLLVTTPFSMMRLLEAQCFLFL
RLCHLVLDEADVLYSQAPEQMSVILKHFQKVVSGEERSSCPRQIIAVGGRWSAGIQALVR
EHMIYPSIIITVMEEAALYGRVHQRVQLCLDCDKISVLLGSLDFHPPKPQKTLIITNSAE
ETEHVYKAVVNTAVFTLKAHEDVTDQFDFVIDQWRKDIGQGTQVILVTTNDCLKALGIRD
ATCVVHYGFPSSPKLFGRRLFCMSENFRSLPDTDHGESWCPAAQSVLLLSELNARHVCGV
LRYLRRAGARLPPELLQFALGVQQAKEEQKTQRPLCCTLKSFGFCRDSTVCPDRHMINKS
LDHPKHPDSGTVMVLPLLIKTASVYSGRIVSRSEDRYEALAAAMSAHYAEERRCAVEVLE
GELYAVQEENSYSRVRVMEVPDKGEQLFSSVTACFIDEGRTQEVKSHQLLQLPAQFQELP
DQAVEIVLCRAQPVDGEVDWNPKVTRAVSVKIRGKLHQARVVMSVGNTIWVDPMVRMTRV
PGLKTYINEYNVHAEILASGFGVNNPQHLDLLKRVFQGEQTLGTLDQHLTDDRSESHALS
LSEEMMTSRMKDVVSTHNALRFINSSSADQEPAEETSPDVNGFSSPDLTSCETDNDEALS
INRLQAANKPQVLHNPALLSFQPPSFHPQIKWFQRGEFVTICVKLTNPVMQKCEFSSDTV
IYSGYVNDRHYHAKLELSGEIIAERCSWEIRCNEPVMKLMKKEKQDWTTLLKHKSAFVSY
EFDHIDETCASPVNGNWFKAELGEDGCFISSESDSDSD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgctagaaatagagataatcaaggtggaggacccgggatgcctgtgggcgcgggtcctg
agaggagcaggcgttcagccggacagccctgaggagtacgagcacctgagggtgcagatg
aacctcttctaccacaaggtcaacatggacctccagaagctgaagcctgcagaactgaag
ctggggctggtgtgtgtggtgttcagtctggctctgaagagctggtgtcgtgccgtggtc
gagtccgtcatcgaggggtcgctggactctcaggcctggtgtttgttggtagaccacgga
gatcacatcatcgtcagagctaatgatgtcaggactcctctggagaagttcctgcagctg
cccttcagggtgcgccgcttcagcctggctgggattcgccccatgacccttcaggtgccg
gtctccggagacacggccgagctggtgccctcctcaacgtgggacagctctgccaccaaa
tacttgcacaatctgctacaagtgtcgactctggtggaagccgttctgtgtgaaacgctt
gccggctgctctgccgttgaactctacttgactatcaatgacacaaagatctgtgtgaac
catgagctcgtggccaagaagtttgcctgtttcgtgagtgagaagtcgagcgtgccggac
gggaacaggaatggagaccgggttcctgtcagcctggcgtgggacatttactcccgtcct
caagagctcttggagatgaagggctgctgtccggtcaaagcttcgcccgcgcccgaaatc
ccccagaatccccaacgaaccgagcggagagatgatccacaaccacagacagaaagcgag
ccgcagaaaccgcaggtgtcggaggaagaacacacgcattctccggtcaaacctcaagtc
cataaactggcccgcaatgctgggaccaacactatcggcagaggatggcggatcagagtt
gaggccacgggcattaccacagaggaaagctgtgcgcagaccgacgtaaacaaggcccaa
tgcatgaagtttaaattacgttcaaagcagattcctgaatctgttgaagagaagcggcac
agtcctgatcggcctgaagagaacggcgtggcttcagcaccagccgggagttcggcatca
tgtgccagtgactcctcagaggagcagaaagaggcatctctcccccaagagcccaatctt
gatgatcagctggcctcgtcaagactcatgcagtttctgaaccctgatccactcaatcca
gaccaagaatctcttgatgccaaagctgcacgctgtgacccgggtcacctgggtgtgttg
gtgcactccgccctgcgtgtcgaaccctgcagaaacctggcccgcgctcccatcagcgag
cagttcagaaagttcctgctgcggaggaagtataacgggccgaatgtggcggagagctac
tgttggcctgcggtggctcggggcttcgacacagtgctggtgtcacacagcggggacaat
cctctgtcctatatccctcctctgctgatgctgttgcagacggtgtcggtcgtctccagc
ctcgctgctcgctctgggcctgtggcggtgattctgtgcccaggctgggagaaagtccag
acggtgctggagctcctggaggacagccgagccactcacagtctccgtcccaccagtgct
ctgctgggcttggaccaggacgagcccaagaagttcaagatcccgaggaactgtcagctg
ctggtgacgaccccgttctccatgatgagactgctggaggctcagtgctttctgttcctg
aggctgtgtcacctggtgctggacgaggccgatgtcctgtattcacaagctcctgagcag
atgtcggtgatcctgaagcactttcagaaggtggtgtccggagaggagaggtcctcgtgc
cccaggcagatcatcgcggtcggcgggcggtggagcgccgggatccaggctctggtgcga
gagcacatgatctatccctctatcatcatcaccgtgatggaggaggccgcgctgtacggc
agggttcatcagagggttcagctgtgtctggactgcgacaagatctccgttctgctcgga
tctctggacttccatccgcccaaaccccagaaaaccctcatcattaccaactcggctgag
gagacagagcatgtgtataaggctgtggtcaacactgccgtattcacactgaaagctcat
gaagatgtgacggaccagtttgacttcgtcattgatcagtggaggaaagacatcggtcaa
ggaacccaggtcattctggtgaccaccaacgactgcctcaaggctcttggtatccgggac
gccacatgcgtggtccattacgggttccccagctcccccaagctgttcggccgacgcctc
ttctgcatgtcggagaacttcagaagccttccagacacggatcacggcgagagctggtgc
ccggcggctcagtctgtgttgctgctctcagagctgaacgcccggcacgtgtgtggtgtg
cttcggtacctgaggagagccggtgcccgtctgccccccgagctgctgcagttcgctctc
ggtgtccagcaggccaaggaggagcagaagacccagcgcccactctgctgcacactcaag
agcttcggcttctgcagagacagcacagtttgtccagatagacacatgatcaacaaatcc
ctggatcatccaaagcacccggactctggcactgtaatggttttgccgctgctgataaag
accgcgagcgtgtactcggggcggatcgtgagccggagcgaggaccgttacgaggctctg
gcggctgccatgagcgcgcactacgccgaagagagacgctgcgctgtggaggtgctggag
ggagaactgtacgccgtccaggaggagaactcctacagccgtgtgcgtgtgatggaggtg
ccggataaaggagagcagttgttcagcagcgtcacggcctgcttcatcgacgagggccgc
acacaggaagtgaagtcacaccagctgctccagcttcctgctcagttccaggagctgccg
gaccaggccgtggagatcgtcctgtgccgagcgcagcccgtcgacggagaggtggactgg
aacccaaaggtgaccagagccgtgagcgtgaagatcagagggaagcttcatcaggccagg
gtcgtgatgagcgtggggaacaccatctgggtcgatccgatggtgcgcatgacgcgagtg
ccgggtctgaagacctacatcaacgagtataacgtccacgctgagatcctggcctctggg
ttcggtgtcaataaccctcagcatctggacctgctgaagagggttttccagggagagcag
accctcggcacgctggatcagcacctgacagacgacaggagtgagagccatgcgctgagc
ctctccgaggagatgatgaccagccggatgaaggatgtggtcagtacccacaatgcactg
cgcttcatcaacagcagcagcgcagatcaggagccggcagaggagaccagcccggatgtg
aacggattctcatctccagacctgaccagctgtgaaacagacaatgatgaagccctgagc
atcaacagattacaggctgctaataaaccacaagtactccataatccagcacttttatca
ttccagcctcccagtttccacccacagatcaagtggtttcagaggggcgagtttgtgacc
atctgtgtgaagctcaccaatccagtgatgcagaagtgtgaattcagctctgacacagtc
atctacagtgggtacgtgaatgaccggcattaccacgcaaagctggagctgtccggtgaa
atcatcgcggagaggtgctcatgggaaatcaggtgcaatgagcctgtgatgaagctgatg
aaaaaggaaaagcaggactggacgacgctcctcaagcacaagagtgccttcgtcagctat
gagtttgaccacatcgatgagacttgtgcttctccagtgaacgggaactggttcaaggca
gagttgggagaggacggctgtttcatcagctccgagagcgacagcgacagtgactga
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integrated database retrieval system
