Pimephales promelas (fathead minnow): 120468281
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Entry
120468281 CDS
T08155
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120468281 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120468281 (lrrc4ca)
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
NGL family
120468281 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
LRR_9
Ig_2
LRRNT
DUF7617
Ig_6
Sp38
Syndecan
DUF6821
DUF4293
Motif
Other DBs
NCBI-GeneID:
120468281
NCBI-ProteinID:
XP_039512931
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MINKMTSSLMQQTMRGPRWNRALSDPLFVLSLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQENLIQVIRVDSFKHLRHLEILQLSKNHIRTIEIGA
FNGLANLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLTYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVRLDELEMSGNQLSVIRPGSF
KGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHVERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCASPTSHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRANSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETTESSHDEGHPTVQQKGAPT
PSSGIWETLPPSFTTTTTTTTTARTPLSTKATDKTYTIPVTALIDGSLNTLDEVMKTTKI
IIGCFVAITLMAAVMLIIFYKMRKQHHQQNHNAPTRSIEIINVDEDCVTGGPTMEGHLSL
PPLEHEHLNHYTAYKTVYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgataaacaagatgacctcctccctgatgcagcagacgatgagaggtcctaggtggaac
cgggccctgtccgacccattgttcgtgctgtcactggccctgcagcttctggtggtggct
ggcctagtgcgagcgcagacctgcccctccgtctgctcttgtagcaaccagttcagcaag
gtcatctgtacacggcgttcccttcgagatgtacctgatggtatttccaccaacacaagg
tacctgaaccttcaggagaacctcatccaggtgattagggttgacagcttcaagcatttg
aggcacctggagatcctgcagctcagcaaaaaccacatccgcaccattgaaatcggagct
ttcaacgggctggccaacctcaacactctggaactcttcgataatcgtttgaccacaatc
cccaatggggctttcgagtacctgtccaaacttaaggagctttggttgaggaataaccct
atcgagagtataccctcgtatgccttcaaccgcgtaccatcgctgcgaaggctggacttg
ggcgagctgaaaaggctcacttatatttcagaaggtgcctttgaaggcctcagcaacctg
cggtacctgaacctgggcatgtgcaacttgaaggagatccccaaccttattcctcttgtt
cgtttggatgagttggagatgtcaggaaaccagctctctgtgattaggccagggtctttc
aaaggccttgtccacttacagaaactgtggatgatgcatgcacagatccagactatcgag
agaaatgcctttgatgatcttcagtcccttgtggagctcaatttggcccacaataacctt
accctcctgcctcatgacctcttcaccccactacaccacgttgagagggtacatttgcac
cacaacccctggaactgcaactgtgacatcctctggctcagttggtggctaaaggaaatg
gtgccggccaataccagttgctgtgcccgctgtgcgtcacctaccagccacaaagggcgc
tacatcggcgaacttgaccagaactatttccactgttatgcaccggtgatcgtggagccc
ccggcggacctgaacgtgactgagggaatggcagcagaactgaaatgtcgagcgaattct
ttgacctcggtcagctggatcacgcccaatgggtccatcatgacgcacggggcatacaag
atacgcatttccgtgctcaacgacgggacgttaaactttaccaatgtcacgatgcaggac
actggaacatacacttgtatggtgagcaactccgcaggcaacacaacagcctccgctact
cttaatgtgtcttcgacagagaacagcagcttcagttacttcactacagttaccgtcgag
accacagaatcgtcacatgatgagggccacccaacagtacagcagaaaggcgccccaact
ccttcttctggaatttgggagactttaccaccttccttcaccaccaccaccaccaccacc
accacagcacggacgccactgtccaccaaggccaccgataagacctacaccatccctgtc
acggccctgatcgacggttccctcaacaccttggatgaggtcatgaagaccactaagatc
atcatcggttgctttgtggccataacgctgatggcggccgtcatgctgatcatcttttat
aaaatgcgcaaacagcaccaccagcaaaaccacaacgcaccgacacgaagcattgagatt
atcaatgtagatgaggattgcgtgacgggtggacctaccatggagggccacctctccctt
cccccactggagcatgagcacctgaatcattacactgcttacaagactgtgtacaatcac
gcctccaccatcaattctatacacagctccgcccacgaacctttgctaattcgggccagc
tcaaaagacaatgtacaagaaacccagatctga
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