Pimephales promelas (fathead minnow): 120468290
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Entry
120468290 CDS
T08155
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
120468290 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120468290 (rag1)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120468290 (rag1)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120468290 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_10
zf-RING_UBOX
zf-RING_2
TRAF3_RING
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
120468290
NCBI-ProteinID:
XP_039512943
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MEKGRWSSEDAPRASMPDELSHPKFSEWKFKLFRVKSMEKAPLSNETPVEKENQPEVEME
MEMEMAGSPGSVMKLCFGGKSKENMESTRGRVDLKLQEIDTHMNLLKSLCRLCGLTIRKT
KGPSHKVQGDLEESSRCALRKMGCKLVTWPEVILKVFKVDVTTDMETVHPSLFCHRCWTA
AMRGGGFCSFTRTRIPDWKPHTSNCNLCFPKKSSFQRMGRKRAKPLKGAHSLSKRIKRDS
PETSGANRSWRQTTENPVGSGGKEWLKLSVQRGQWVKNITQCQKDHLSTKLIPPEVPADL
LRAVTCQVCDHLLSDPVQSPCRHLFCRGCIARYSRALGPNCPTCSQHLNPSHLTRPAKFF
LATLSSLPLLCPSEGCSDWVRLDSFREHCLNHYHEKESQEEQTPSEQNLNGYLPVNKGGR
PRQHLLSLTRRAQKHRLRDLKNQVKVFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADEL
EAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELL
PGYHQFEWQPALKNVSSSWDVGIIDGLSGWTTFVEDVPADTISRRFRYDVALVSALKDLE
EDIMEGLRERGLDDSICTSGFTVVVKESCDGMGDVSEKHGNGPAVPEKAVRFSFTIMSVS
IRVEGEDDGITIFQEPKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMMESRLI
ISVGGLLRSFRFFFRGTGYDEKMVREMEGLEASGSTYVCTLCDSTRAEASQNMVLHSVTR
SHDENLERYEIWRKNPFSESADELRDRVKGVSAKPFMETLPTLDALHCDIGNATEFYKIF
QDEIGEVYQRSNPSREERRRWRSTLDKQLRNKLKLKPVMRMNGNYARRLMTREAVEVVCE
LVPSEERREALKRLMDLYVQMKPVWRSTCPSRDCPDQLCRYSYNSQQFADLLSTTFKYRY
DGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDVL
KHHWLYTSKYLQKFMEAHKNSAKAMQATFNPEETPDDVVDVALEVPDF
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaggtggagttctgaagatgctcccagagcctccatgcctgacgaactg
tctcatcctaagttttcggaatggaagtttaaactctttcgggtcaagtccatggagaag
gcccctctgtctaatgaaacaccggtggaaaaggaaaaccagcctgaggtggagatggag
atggagatggagatggcaggctctcccgggagtgttatgaagctctgttttggagggaag
agtaaggaaaacatggagagcactcgagggagagtcgaccttaagctgcaggagattgat
acacatatgaatcttctcaaaagcctgtgtcgtctttgtggtctcacaatacggaagact
aaaggtccatcgcataaagtccagggagacttggaagagtccagccggtgtgccttgcgt
aaaatgggctgcaagttggtcacctggcccgaggtgatcttgaaggtcttcaaggtggac
gtgacaaccgacatggagacggtacatccgtcattgttttgtcacagatgctggactgct
gccatgaggggagggggtttctgttctttcactaggacccggatcccagactggaagccc
cacacttccaactgcaacctctgcttccctaagaagagctcttttcaacgaatgggaagg
aagcgggccaaaccacttaaaggtgcacacagcctctcaaagagaatcaagagggattcc
ccagaaacttcaggtgccaatagatcgtggagacagaccacagagaatcctgtgggatca
ggtgggaaagaatggttaaaactatcagtgcagagaggacaatgggtaaagaatatcaca
caatgccagaaggaccatctgagcactaagctcatccctccggaagtcccagcggatttg
ctacgtgctgttacttgccaagtgtgtgatcatctgctttccgaccctgtccagtcaccg
tgtcggcacctgttctgtcggggttgcatagcaaggtacagtcgagctttgggcccgaac
tgtcccacctgtagccaacacctgaacccatcccacctgaccaggccagccaagttcttc
ctcgccacccttagctctcttcctctgctttgccctagcgaaggatgcagcgactgggtc
cgattggactcctttagggaacactgcctcaaccactaccatgaaaaagagtcccaggaa
gaacaaacaccttcagagcagaatctcaatggttacttgccagtcaacaaaggtgggcgc
cctagacagcacctgttgtcgctgacccgtcgggctcaaaaacacaggctgagagacttg
aagaaccaggtgaaggtgtttgctgaaaaggaagaaggaggggatgtgaagtctgtctgt
ttgacgctcttccttctggcattgagagctgggaatgaacacaaacaagcagatgaactg
gaagctatgatgcaaggcaggggatttggtctgcatcctgcagtgtgtttggctataaga
gtcaacaccttcctcagctgcagtcagtaccacaagatgtatcgcactgtgaaggccact
agtggccgccagatattccagcccctgcacacactgcgtaacgctgagaaagagcttctc
cccgggtaccaccaatttgagtggcagccggctttaaaaaacgtttccagctcctgggat
gtgggcatcatcgatggcctctctggttggacaacctttgttgaggatgtccctgcggat
accatttccagacgattccgctacgacgtggcgctggtttctgcattaaaagacctggag
gaggatataatggaaggactacgagagagggggctagatgacagcatttgcacgtccggc
tttactgtggtggtgaaagaatcatgtgatggtatgggagatgtcagcgagaagcatgga
aatggtccagcggttccagagaaggcagtgaggttttccttcacaatcatgtccgtctcc
atccgagttgaaggtgaggatgatggcatcaccatcttccaagaaccaaagccaaactct
gagctctcttgtagacctttgtgcctcatgtttgtggatgagtccgaccacgagaccctg
acggcgatcttgggacccgtggtagcagagcggaaagccatgatggaaagtcgactcatc
atatctgtcggtggcctgctacgctcgtttagattcttcttccggggtaccggctacgat
gagaagatggttcgtgaaatggaaggactagaagcatcaggctccacttacgtatgcaca
ctctgcgactcaacccgagctgaagcctctcaaaacatggtgcttcattccgtcacacgt
agccacgatgaaaatctcgagcgctacgagatctggaggaaaaatcctttctcggagtcc
gccgatgaactccgtgaccgggtcaaaggggtttccgcgaagcctttcatggagaccctg
cctactttggatgccctccactgcgacattggcaatgcgactgaattctacaagatcttt
caggatgagatcggcgaagtctaccagaggagcaatccgagtcgtgaggaacgccgtcgt
tggcggtcaactctggacaaacagctaaggaacaaactgaagctcaagcctgtgatgagg
atgaacgggaactatgcgcgccggctgatgacacgtgaggccgtggaggtggtctgtgag
ttggttccttcggaggaacgacgtgaggcactcaagagactgatggacctctacgtccag
atgaagcctgtgtggcgatccacatgtccctcccgagactgccctgaccaactctgtcga
tatagctacaactctcagcaatttgctgacctcctttccaccacatttaagtaccgctat
gatggaaagattaccaactacctccacaagactctggcccatgttcctgagattatagag
agagacgggtctatcggggcatgggccagtgaaggcaacgagtctgggaacaagctgttc
agacgttttaggaagatgaacgcgaggcagtccaagacgtttgaacttgaagatgttctg
aaacaccactggctgtacacctctaagtatcttcagaagtttatggaggctcataagaat
tcagcgaaagcaatgcaagccacatttaacccagaagagactccagatgatgtggttgat
gtggctcttgaagttccagatttttga
DBGET
integrated database retrieval system
