Pimephales promelas (fathead minnow): 120468608
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Entry
120468608 CDS
T08155
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120468608 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120468608 (polr1b)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120468608 (polr1b)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120468608 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
120468608
NCBI-ProteinID:
XP_039513062
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MDLSKWCNLKSEPSLKNLTEAGFGVPKDKQHVPVQELVKAHIESFDQAVTDGLCRVVEAI
PPLEFLYKGNRVSLSFVEAIIHTPAVPKGGISRDLRMFPAECRGRRCTYRGKLVADVSWS
VDGIPKGIIKQSLGQVPIMVKSKLCNLHGLSPKELIKHHEEAEEMGGYFVVNGIEKVIRL
LIMPRRNYPIAISRPKFKSRGQGYTQYGISMHCVKEEHTAINMNLHYLENGTVMVNFIYQ
KELFFLPLGFALKALVDFSDYQIYQELIKGREENSFFKSCISEILRMVMDQGCTTKAKVL
SYLGERFRVKLDLPEWFTHEQCAQFLLDECLCIHVKSNLEKFYVLCMMTRKLFSFAKQEC
MEENPDSLMFQEVLTPGQLYLMFMKEKMAGWLLSFKRILEKKSERLGELTTNGLTKIFNM
ATDLTNAFEYMLATGNLQSKTGLGMLQNTGLCVVADKLNYIRYLSHFRCVHRGAAFAKMR
TTSVRKLLPESWGFLCPVHTPDGDPCGLMNHLTAQCEIVAQGHPTTTLPALLCSLGVTAV
DGSPSQPYSDCYPVILDGAMIGWVEKEVAPSVVESLRRFKVLREKKVPPWTEIVLVPQTG
KASLYPGLHLFTTPCRMVRPVRNLGLGKQELIGTFEQVYLNVGIFEEELEEGVTTHQELF
PHSMLSVVAEFIPYSDHNQSPRNMYQCQMSKQTMGFPMHAYQERSDNKLYRLQTPQSPLV
RPTMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGFVYKTDVIDLG
KKVKGEDSIVFGVKPGDTTLLGRLDADGLPFIGSVLKYGDPYYSYINLNTGQSRVVYFKY
QESSIVDNIKVCSNDTGTGRFKYICITNRIPRNPTIGDKFASRHGQKGILSRLWPAEDMP
FTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSASLHGLSHDATPFKFSEETSALEHFG
EMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTN
QPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCIDCGSLLSPLLEK
PPPHWSTTRHRETYCLLCNKSDSIEAVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggatctctcaaagtggtgtaatctaaagtccgaaccgagtttaaagaatttgacagag
gcagggttcggagtcccgaaagacaagcagcacgttcctgtgcaagagctggtgaaggcg
cacattgagtcatttgatcaggcagttactgatggattatgtcgggttgtggaggccatt
cctcctttggagttcttgtacaagggaaacagagtcagcctgtcttttgtggaggccatc
attcatacgccagcggttcctaaaggaggaatcagccgagatctgcggatgttccctgcc
gagtgcagaggcaggcgctgtacatacagggggaagctggtggctgatgtgagctggtct
gtggatggcattcccaaaggaatcatcaaacagtctttgggacaggtgccgatcatggtc
aaatcgaaactctgcaaccttcacggtctctcacccaaagaactcatcaagcatcacgaa
gaagctgaggaaatgggtggttattttgtggtgaatggcatagagaaggtgattcgtctt
ctgatcatgccgaggaggaactatcccatcgctatatcaagaccaaagtttaagagcaga
ggacagggctacactcagtacggtatttcaatgcactgtgtaaaggaagaacacacagcc
atcaatatgaatctacactacctggaaaatggaacagtgatggtgaatttcatttaccag
aaagagctgttctttcttcccttgggctttgcgctgaaggctctagtggatttctcagat
taccagatctaccaggaactgattaaaggtcgagaggagaactctttctttaagagctgt
atctccgaaattctgcgtatggtcatggaccagggctgcacaactaaagccaaggtgctc
agttacctgggcgagcgtttccgggtcaaactcgacctcccagagtggttcactcacgag
cagtgtgctcagttcctgttagatgaatgtctgtgtatccacgtaaagtcaaatttggag
aagttctacgtgttgtgcatgatgacacggaagctctttagctttgccaaacaggagtgt
atggaggagaaccctgacagtctgatgttccaggaagttctcacaccaggccagctctac
ctcatgttcatgaaagagaaaatggctggctggctgttgtcgtttaaaaggatcttggaa
aagaaaagtgaaagactgggagagctgaccacaaatggtttaaccaaaatcttcaacatg
gctacagatctcaccaatgcctttgagtatatgttagccacaggaaacctccagtccaag
acaggtctgggcatgctgcagaacaccggactgtgtgtcgtggcggataagctgaactac
atccgatacctgtctcattttcgctgcgtgcacagaggagccgccttcgctaagatgagg
accacgagtgtgcggaagctgctgccagagtcttggggattcctgtgtccggtacacact
cctgacggagatccgtgcggcctcatgaaccacctgacagcccaatgtgagattgtggca
caggggcatcccacaaccaccctgcctgcgctgctctgctctctgggtgtgactgctgta
gacggtagccccagtcagccttattcagactgttatcctgtcatactggacggggccatg
attggctgggttgaaaaagaagtggcgccctcagtcgtcgaatctctacgcagatttaag
gtgctgagagagaaaaaagtgccaccctggactgagattgttctggttcctcagacgggt
aaagccagtttgtacccaggcctccatctgttcaccacaccctgtcgcatggtgcggcct
gtccgaaacctaggcctgggcaaacaggaacttattggcacttttgaacaggtgtacctg
aatgtgggcatctttgaagaagagttagaggagggagtgaccacacatcaagagctgttt
cctcacagcatgttgagcgtggttgcagaattcatcccttactctgatcacaaccagagc
cccagaaacatgtaccagtgccagatgagtaaacagaccatgggcttcccaatgcatgca
taccaggaacgatccgacaataaactgtaccgtctgcagaccccccagagtcctctggtc
agacccacgatgtacgatcactacaacatggacaattaccctattggcacaaacgcaata
gtggctgtcatttcttacactggctacgatatggaagatgctatgattgtcaataagtcc
tcatgggagcgtggctttgctcatggttttgtttataagaccgatgtcatagatctgggc
aaaaaggtcaaaggcgaagacagcattgtgtttggggtaaagccaggggacaccacatta
ctgggcagactggatgcagatggattgccatttattggctccgtgctgaagtatggagac
ccttactacagctacatcaatcttaataccggccagagtcgtgtggtctatttcaagtac
caggagagcagcatagtggacaatatcaaggtgtgcagcaatgacaccggcactggccgt
ttcaagtacatttgcatcacaaaccgcattcccaggaacccgaccattggtgacaagttc
gccagtagacacggtcagaaaggaatcctgagccgcctgtggcccgcggaggacatgcca
ttcaccgagagcggcatgagcccggacatcctgttcaaccctcatggcttcccctccaga
atgaccatcgggatgctgatcgagagcatggctggaaaatctgcgtcactccacggcctg
tctcacgacgccacacccttcaagttctcagaggaaacctctgcgttggagcactttggc
gagatgctgaaagccgcgggatacaacttctacggaacagagcggctctactccggcatc
agcggcttggagctcgaggctgacatcttcatcggggtggtttactaccagcgcttgcgt
cacatggtctctgacaagttccaggtgcgaactacgggagcgagagataaagtgaccaat
cagccgctgggagggaggaacgtgcagggagggatccggtttggagagatggaacgggat
gctttgctggctcacgggacgtcgtttctgcttcacgaccggctgtttaactgctcagat
cgctccgtggcgcaagtttgcatagattgcggcagcctgctgtcgccgcttctggaaaag
cctcctcctcattggtcaactacacggcatcgggaaacatactgcttgttgtgcaataag
agcgactctattgaggctgtatccgttccttatgtgttcagatacttcgtagcagagctt
gctgcaatgaacataaaagtcaaattagatgtcaagtaa
DBGET
integrated database retrieval system
