Pimephales promelas (fathead minnow): 120468828
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Entry
120468828 CDS
T08155
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120468828 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120468828 (vps8)
Membrane trafficking [BR:
pprm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120468828 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_5
zf-RING_2
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_11
ANAPC4_WD40
Beta-prop_HPS5
EIF3I
WDR55
zf-C3HC4
PHD_4
Motif
Other DBs
NCBI-GeneID:
120468828
NCBI-ProteinID:
XP_039513368
LinkDB
All DBs
Position
Unknown
AA seq
1414 aa
AA seq
DB search
MAESPDSRSLVSASSQLNLMEIEAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRRRKAVETNATVHGSVLRRSVLKGISAQIV
SAADKVDAGLPTAITVSNVIAVGTSHGLALVFGKDQNQALRLCLGTTATGAEYGAVSALS
INHDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDHPALAVCNDSGG
SVFELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGADLKDHPITQYSLLAMASLTKI
LLIGLKPSLKVWMTFPYGKTDPTSVPLLAWQFVAVQKAINPVLAFCRGDTIHFLLVKKDE
SGTIHVIKQRQLQLNCDLINLSWINPRTLVLMDSTEKLRVVDRPSQEELETVDMAELQLV
YNSCHFKSLATGGNVSQALALVGEKTCYQSVCSYAGQIMYLGTKSVHIMTLRNWRERVDH
LLKQEKFMEALSLAWSFHEGTAKAVLGLFADPAKRKGVVADKMVEMLLQYVDHSLKKCPE
QGKIQVMEQHFQDMVPVMVDYCLLLQRTDLLFNQIYPRLVENSVARGVFLESLEPYILSE
RIGCLTAPVMRDLLSYFQENGMMDSVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMIYVF
NSGMNDYISPMEKLFQAIGPHLQEGKPLTDEHVVMGNKLLVYISCCLAGRAYPLGDIPED
LVPQVKNQVFEFLIRLHSVEAAQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQAL
EYQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSP
DDDSRHTERQQVLLELLQVGGVVQFDEGRLHELAEKAEFYQICEFLYENKHLYDKIFDCY
LKDPLRKEELFNYIHNILSMPGYSSEEKHLVWVKGLQHIKDLVSLNSAKTAELVAVHFTD
EVQSIITSLQDDYLVFQFLKCLLDPSSREGLNLQTALRLGSDLHELLVDLLCQFSPQHVI
TFLKTSQDYRLEEAIQITEKHKLHEATAFLLERKGDVQGAFEVLLQTLKGKLHTLALKGS
EAEKPDNEEEETSNEVQSLLQIVDEALHDIITLCQRSSHGLNQQQREALWFPLLEAMMSP
QKLLKGADAKHTSDALKELTMKVLNSMSSFIAPPAIIQRILQDPVYGKGKLAEIQGLILG
MLETFNYEQTLLETTTNLLNSDLHWSLSHLRKAVSRGLHPRQDHCNICLQQYKRRQESEE
EIIIFSCGHLYHCLCLQRKEAGVLSERQYSWSCYKCTSNQGSRPADRPSAESSRSRSASL
AQTKVTSAHRGNVAEAHGRKMLTEATLDAQQTLAWDQFRTIYRGPSRLAVLTELTHSHGN
ERSGLTNPAPPGTGSIYHSENFQLKLSPPPLVEE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatctccagacagtcgcagtcttgtttctgcgtcatcacagctcaatttaatg
gaaatagaggcgattgatgataaagaatttgacatccctcaagtagacactcctccgacc
ctggagagcattctgaatgagcctgaagatgaggacgagccatttattctggaggatacg
tgtcttttgaacacagagaacattgatgcccactcctgtgagacctcttctctggccagc
tctgacagtggagaccgcacacacttaaagagaaggaggaaagcagtggaaactaacgct
acagtacatggatctgttcttagacgcagtgtgctgaaaggcatatcagcccagatagta
tctgctgcggataaagttgatgctggcttgccaactgcaataactgtttcaaatgtgatt
gctgtagggacgtcacatggtctggccttagtatttggaaaagatcagaaccaggctctg
cgactctgcctgggcaccacagcgacaggagcggagtatggtgcggtgtcagctctcagt
attaatcatgactgtacacgactactgtgtggttttgccaaaggacagatcactatgtgg
gatctggccaatgggaagctgctccgcactatcacagacgcccatccacccggcactgcc
atactacatgtgaagttcactgaccacccggcgctagctgtatgtaatgacagtggcgga
tcggtgtttgagctgtcattcaggagggtaatgggaatgaggacgtgtgaatccaggtgt
ttattcagtggttctaaaggtgaggtttgctgtgttgagcctctacatgctggagctgat
ctgaaagatcatcctattacccagtactcccttctggccatggcatcactcactaagatt
ctgctgataggactgaagccttcactcaaagtgtggatgacttttccctacggcaagacg
gatcctacgagcgttcccttgttggcgtggcagtttgtggcagtacagaaagcaatcaac
cctgttctagccttctgtagaggagacaccatccacttcctgctggttaaaaaagatgag
tctggcaccatccatgtcatcaaacagagacagctccaactcaactgtgacctcatcaat
ctgagctggataaacccccgtacgcttgtgttaatggacagcacagagaagctgcgagtg
gtggatcggcccagtcaggaggagctggaaacagtggacatggctgagctgcaactggtt
tacaacagctgccattttaaatccctcgctaccggtggaaatgtcagccaagcactggca
ctagttggagagaagacatgttaccagtctgtttgcagctatgcagggcagattatgtat
ctgggaacaaagtctgtgcatatcatgaccctgaggaactggcgagagcgtgtggaccat
ctgttgaagcaggaaaagttcatggaggctctgtctctggcctggtccttccacgaaggc
actgccaaagctgtgttaggtttatttgcagaccctgctaagagaaaaggtgtggttgcg
gacaagatggtagaaatgttgttacagtatgtggaccactctctgaaaaagtgtccagag
caagggaaaatccaagtgatggagcagcacttccaggacatggttcctgttatggtggat
tattgtctccttctacagaggacggacttactgtttaaccaaatctaccctcgcttggtg
gaaaactcagtggccaggggtgtgtttctggagagtctggagccctacattctgagcgag
cggattggctgtctgactgcacctgtcatgagagacctcctcagctacttccaggagaac
ggcatgatggatagtgttgagggatgcctggtccacatggacatcactaacctggacata
caacaggtggtgcagatgtgctgggataaccagctgtatgacgccatgatctacgtcttc
aacagtggcatgaatgactacatcagccccatggagaaactctttcaggcaattggtcct
catctgcaagaaggaaagcctcttacagatgaacatgttgtgatgggaaataaactactg
gtgtacatcagctgttgtttggcaggacgtgcctatccgttaggtgacattcctgaagat
ctggtgcctcaggtgaaaaaccaggtgtttgagttcctcattcgtctgcactcggtggag
gctgcacaggaagaggaagtgtatccctatatccgaactctcctgcacttcgacactcga
gagttcctcaatgtcttggcactgacatttgaggacttcaagaatgacaaacaggctctg
gagtatcagcaaaggattgtggacattttactgaaggttatggtggacaattccgacttc
accccatctcaggtcggctgtcttttcaccttcttggcacgacaacttgccaaaccagat
aataccctctttgttaaccggaagctgtttgaccaggttctagagtttctatgtagtcca
gatgatgactctagacatacagaaaggcaacaggttctgctggagctgctacaggtcggt
ggtgtggtccagtttgatgagggccgtctccatgagctcgcagagaaggcagagttttat
caaatctgtgagtttttgtatgaaaacaagcacctttacgacaaaatattcgactgctac
ctgaaggaccctttgagaaaggaggagctcttcaactacatccataacattctgtccatg
ccgggctacagctcagaggagaaacatttggtgtgggtcaaaggccttcaacatatcaag
gatttggtcagcttaaactcagctaagacagctgagctagtggcggtgcactttacagat
gaggtgcagtctatcattacatctctgcaggatgactatttggtgttccagtttctgaag
tgcctcctggaccccagctccagagagggtctgaatcttcagactgctctaagattgggc
tcagatcttcacgagctcttagtggatctactgtgccagttcagtcctcagcatgtcatc
actttccttaagacctctcaggactacagactggaggaggccatccagatcacagagaaa
cacaagctgcatgaggccacagccttcctgctggagaggaagggagatgtacagggagct
ttcgaagtgctactacagaccctgaagggcaaactgcacacacttgcactaaaaggctca
gaggcagagaagcccgacaatgaggaggaggagacaagcaatgaagtgcagagcctgtta
caaatagtggatgaagctctgcatgacatcattactttgtgtcagaggagctcgcacggt
ctcaaccagcagcagagagaggctctgtggtttcctctccttgaggcgatgatgtcacca
cagaaactactcaaaggtgccgatgccaaacacacttcagacgcactaaaagagctcact
atgaaagtcttaaacagcatgtccagttttattgccccacctgccatcattcagcgcatc
ctacaggaccctgtatatgggaaaggaaagctggctgagatccaggggctcattttaggg
atgctagagaccttcaactacgaacagacgttgctggagacaaccaccaatctgttgaac
tctgatcttcactggtctctgtcacatctgcgtaaggcagtcagtagagggctccaccca
agacaggaccactgcaacatctgcttacagcagtacaaaagacgtcaagagagcgaggaa
gagatcatcatcttcagctgtgggcatctgtaccactgcctgtgtcttcagcgtaaagag
gctggtgttttgagtgaaaggcagtactcatggagctgctacaaatgcacatccaaccag
ggctcgaggccagccgacagacccagcgcagagagctcccgatcacgctctgcttctctg
gcacagaccaaagtgacatctgctcatcgtgggaatgtggcagaggctcatgggagaaag
atgttgactgaagccactctggatgcccagcagacactggcctgggatcagttccgcact
atctacagaggaccatctaggcttgccgttctgacagaactcacacattctcatggcaat
gagaggtccggtctgacgaatcctgcccctccaggaacaggaagtatttatcacagcgag
aacttccagttaaagctttctccaccaccactggtggaagagtag
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integrated database retrieval system
