Pimephales promelas (fathead minnow): 120469241 Help Entry 120469241         CDS       T08155                                  Name (RefSeq) nephrocystin-4-like isoform X1   KO K16478   nephrocystin-4 Organism pprm  Pimephales promelas (fathead minnow) Brite KEGG Orthology (KO) [BR:pprm00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:pprm03037]     120469241 Cilium and associated proteins [BR:pprm03037]  Primary cilia and associated proteins   Nephronophthisis-related proteins    120469241 SSDB OrthologParalogGFIT Motif Pfam:  NPHP4_C2_3rd Ig_NPHP4_1st NPHP4_C2_2nd Ig_NPHP4_4th Ig_NPHP4_2nd Ig_NPH4_3rd NPHP4_SK Motif Other DBs NCBI-GeneID:  120469241 NCBI-ProteinID:  XP_039514032 LinkDB All DBs Position Unknown AA seq 1424 aa AA seqDB search MSDWKNAFERNRVIPPHSQTARQAPGSSQGLQLHLKQIDGLHIRQSELPQSLQYQLRVTL FDSGHQHFFGRTWKSRSHSLSGTTGQSSQVLFNEVVYFHTSLCLNTVVAVVELVCIRVDG SQDAVGSGFGLLQLFTGRADTRISQGEGRLSLFNGTPRALLHPTLKDPLQLNAVLSVMEG SQLLYSIQPHPALTPIMHLLPPNILVSGHDRIPGVVFSTDTGTDALRKPRLLKSFSCVLE GLRVALFPSVEVFESDLLQLLNRDCQNTNRGAEGRSVVVQERRLLVGVHNGWGWVEEPHV LVLEREATGSRAARSHGASAGGGFRQTSTDNLSDGLSLRGSVELKMMRDVVFSIVFQLQY VFSCPLVGDGQMTSTAVHRAAFMQCVRWCAWSLFSDPEGPGENMCLNLQGGALPNPWGVM VYSASTQQTNSGKCVIKFKFSSSVEGAPCSTTLKGSHRETSPPKKLLSATQDECILEPTA STPQSSRGPALSLSQLVATSRYPTMSHTVGSPWQQQLPSQLSPSPMASAHQLSHVERPVA SSIAHLELSVQEREADRSEEEDEMQELTFTPVHAPVITLGTHSAGSSRSTSRRSLAQLFS TGFPQILDHQNQVAEVLDPSEPVNFDLQREEADHLQVNTLILQFLAFTRVPQTGVNSDWP SSVHFTFQLYRFQPVTTERLKLLEPERNSKLKSNPHYPCVLSLINKDGTLNSGFPGLQLQ YRVDPQFLKPGERGWFLRYLAIHSLQIDVWDSESLMLIGSAAVELKHMLRQGRAAVQVSH ELEVITTEYLQDANFASRHDSKHSTSPAINVYTTVKGILHLRLGNVGGSVSSSQSSLALP PSLSHVVQPGDASRGFAGGSVPALTVLQLNASNARRARRLPEIDSELARLLQSTMREVGG AALHQQDEVKEVRQRKIDRMAAVRQHEQQKATPPFEDHANMTRHRTERVQHSRDLRVIEA YRERCKAQEITNMLSQAITTKHTLYATLGTAEFFEFVLKNPFNVPQTVTIECDDPELSVI VKSEEWRYFKELTKTLTPLEEEMFHLKESTLTPQVYLRPKESVHIPFKYQTFVCGCIFPL QDTKSLKISRSPQMAQKHLSNTIQAKSIKVLFRGEDRKPLAICQVDVEPTPHVVDQTFRF YHPELTFLKKAIRLSAAWDDIADGSATLHVRCSDPNVICHTTSLTPEEPQDVYLKVPGSP SPQIRKFFITIFTEPWLASPAQIWQVYVHYLQRMDLSCVCGTLSWHSLVLRGTQAIRRVK CYTSPPLELQVDPVEVFALPAQGIQDIHVGLRALRPGSRFFYLNVVDVDTRQLVASWLLC ITCRQPVISKAFEINVPVDGGKGSNKKISFTNPYSSSRVFNLCTDRPDLLRFKEEQFQIG GGEPYTIGLRFAPSQNPGIEEILIFINDKQDKNEDTYCVRVQYR NT seq 4275 nt NT seq  +upstreamnt  +downstreamnt atgtctgactggaaaaacgctttcgagagaaaccgagtgattccacctcacagtcaaacc gccagacaagctccaggatcttctcaaggtctacagctgcacctcaaacagatcgatgga cttcacataagacagtcagagttgccacaatcactccagtaccagctgcgtgtgaccctg tttgactcgggtcaccagcacttcttcggccgcacatggaagagcagatcacactctctc agtggcacgacaggtcagagcagtcaagtgcttttcaatgaggtggtttacttccatact tccctgtgtttgaacactgtggtggcagtggtggagttggtgtgtatcagggttgacggt tcccaggatgcagtggggtcagggtttggactcctccagctcttcacaggtcgtgcagac accaggatctctcagggagagggcaggttgagtcttttcaatggaacccccagagccctc ctgcacccaacgctgaaagaccctctgcagttgaatgctgtattatcagtgatggagggc tctcagctgctctactccatacagccacacccagctctcactcccatcatgcacctgctc ccaccaaacattctagtatctggacatgaccgcatccctggcgtcgtgttctccacggac acaggcacagatgcactgcggaagcctcgtctgttgaaaagcttctcatgtgtgttggag ggcctacgtgtggcacttttcccctccgtggaggtcttcgaatctgacctgctccagctg ctcaacagagactgccagaatacaaacaggggtgcggagggccgctcggttgtggtgcag gagcgcaggctgctggtgggggtccataacggctggggttgggtggaggagcctcatgtg ttggtgctggaacgtgaggccacagggagcagagcagccaggtctcatggagccagcgca ggcggaggcttcaggcagacctccacggacaatctcagtgatggactgtctcttcgtggc agtgtggagctgaagatgatgagggacgtggttttcagcatcgtcttccagctccagtat gttttctcttgtccactggttggagatggacagatgacatccacagctgtgcacagagca gcgtttatgcagtgtgtgcgttggtgtgcttggagtctgttttcggatccggagggtccc ggagagaacatgtgcctcaacttgcagggcggtgctctccccaacccttggggtgtcatg gtctactctgcaagcacacagcagacaaattcaggaaaatgtgtcatcaagttcaagttt tcatctagtgtggaaggagctccttgcagcacgacattaaaagggagccaccgggaaacg tcgccacctaagaagttactttcagcaacccaagatgaatgcatcttggagccaacagct tcgacgccgcagtcttcacgcggcccagcgctgtctctctctcagctggttgcgacttca cgctacccgaccatgagccacacggtggggtctccatggcaacaacagctcccctctcag ctctctccctccccgatggcatcggcccaccagctgtcacatgtcgagcgtccagttgcc agcagcatagctcacctggagctgagtgtgcaggagagagaggcagatagaagtgaggaa gaggatgagatgcaggagctgaccttcaccccagtgcatgcccctgtcatcacccttgga acacactctgcgggctcctccagatcgacctcccggagatctttggcccagctcttctcc actggttttcctcagatcctggaccatcagaaccaggtggctgaggttttggatccttct gagcctgtcaactttgacctccagagagaagaagcagatcatctgcaggtcaacactctc atcctgcagttcctggcctttaccagggtccctcaaactggtgtgaattcagactggccc agctctgtccattttactttccagctttaccgtttccagcctgtcaccacagagcgcctg aagctgcttgagccggagaggaacagcaagctcaaatccaatcctcattacccttgtgtc ctctcccttatcaacaaggatggcacacttaattctggttttcctggtctgcagctgcaa taccgagttgacccgcagttcctcaagccaggtgagcgggggtggttcctgcgatacctg gcgatccactctctgcagattgatgtctgggacagtgaatccttaatgctgattggctca gctgctgtggagctgaagcatatgctgcgtcaaggccgtgctgccgtccaggtgagccat gagctggaagtgatcactacggagtacctgcaggatgccaactttgccagcaggcatgac agcaagcacagcacctctccagccatcaatgtctacactaccgtaaaaggaattctgcat ttgcggcttggaaacgttggtggcagtgtgtcgagttcccagagttctttggctcttcct ccatcgctctcccatgtggtccagcccggcgatgcctctcggggttttgcgggaggaagt gtccctgctttaacggttctccagcttaacgcgagcaatgccagacgagcccgccgattg ccagaaattgacagcgagctggccagacttctacaaagcaccatgagggaagtgggtgga gccgcactgcatcagcaggacgaagtgaaggaagtgcgccagagaaagattgacagaatg gcagctgtccgtcaacatgagcagcagaaggccacgcccccttttgaggaccacgcaaac atgacgaggcatcggaccgagcgggtgcagcattcccgtgatctgcgtgtgatcgaggct tatcgtgaacgctgtaaagcacaggagatcaccaacatgctctctcaagccatcactacc aaacacactctgtacgccacactcggaacagccgagttcttcgaatttgtgctcaagaat ccgttcaacgttcctcagacagtcaccattgaatgcgatgacccagagctcagtgtaatc gtgaagagtgaggagtggagatattttaaggagctgacgaagactctgactcctctagag gaggagatgtttcacctaaaggagagcacactgacaccacaggtttacctgcggcccaaa gaaagcgtccacatccccttcaagtaccagaccttcgtctgtggttgcatcttccctctt caggatacaaagagcttaaagatttcaagaagtccacagatggctcagaaacatctgtcc aatacaattcaagccaaatccatcaaggtgttgttccgtggggaagacagaaagcctctg gcgatctgccaggtggatgttgaaccgacgccacatgtggtggaccagaccttccgtttc taccatcctgaactcaccttcctaaagaaggctattcgcctgtctgcagcctgggacgac atagcagatggttctgccacccttcatgtgcgttgcagcgaccccaatgtcatctgccac accaccagcctgactccagaagaaccgcaggatgtttacctgaaagtacctggaagccca agtccacagataaggaaattcttcattaccattttcactgaaccttggctggcctcccct gcgcagatctggcaggtatacgtgcattacctgcaaaggatggacctgagctgtgtgtgc ggcactctgagctggcattcgctggttctgcgcggcacacaagctattcgcagggtcaag tgctacacgtcgcctcccctcgagcttcaggtggatccagttgaggtttttgctcttcct gctcagggaattcaagatatccatgtagggctgagggctctgcgccctggaagccgtttc ttttacctcaacgtagtcgatgtggacacacggcagctagtcgcctcctggttgctgtgc ataacatgcagacagcctgtaatatccaaagcatttgaaatcaacgttcctgtagacgga gggaagggcagcaataagaaaatcagtttcacaaacccctactcttcctctagggtattc aatctctgcacagaccgcccagacctgcttcggtttaaagaggagcaatttcagattggg ggaggggaaccctacaccatcggcctgcgctttgctccaagtcagaaccccggcattgaa gagattctcatcttcatcaatgacaaacaggataagaacgaggacacttactgtgttagg gttcagtacagataa

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