Pimephales promelas (fathead minnow): 120469354
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Entry
120469354 CDS
T08155
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C-like isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120469354
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
120469354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
120469354
NCBI-ProteinID:
XP_039514228
LinkDB
All DBs
Position
Unknown
AA seq
1062 aa
AA seq
DB search
MDNKFPDQLYPHLYLDGPPEEEAKHNYGGWGSYERVRTVGAGPCDAEQPWSPPVFEPQHD
VNSEEWLPVKPAVAPLMPPYEDAKVPSIDLPDPMNFPDHMHYFYQHYFMDAFSTMGHLLQ
DDFTFQRKAPKDVLSMRWSRDFINGLKYKRCEYANFSKKIRRMHHLLRDIVSDVPPSLLS
SLLYEELTTQRERLQFSAENTGGTLGFVPLRDNQSSRVASLIYPRGVGMDKVFFHKVVQH
FNDDKPPSFVLQPQPSVFYLKGSIRQISPGKMEEEGHVAVRSDYLCGVWVLGSRTKPRLV
EVIETKDPFSCVTGSPHMPNEFVVVNERGAAYLWTVRRGLQKFREESSNLYFNAKSSWRW
CEFSSHPRVMVYADRTGAELTDIRCHENTHTLFRIGKTPGCVSGERVIIAKYLSKSHAHH
HLINTQYSTYIMDERVPSVPMLKWNHMMEAPPTFACDLPGQTPSQTCKLLLGSQRTQEIM
LLQYTGGREHACQTQGPIQRLFNPKECLSHLNLQLPHKKHIAQKRLNVPVSGFAAVQYED
YMSVFQLSETGDVFYQTLKLHADQTTTSKDVPEQAVSVEHTGETGETQNSDSQSSQSDSE
TEGRQLSETGSVISQTLELQRAQTRTNKDIPKQAVCVERIVENGEHVNFKSHANSDVHSS
QSDSEAEGRQVMLDHLEVIDNVDVDDLNASDTDKGISKDPLSSSIGNNPTCSNRPPNPSK
DPDLQAAWNEWFKPIFKKASAKKRHSHFRRLRTDDLNGLKGKKPYKRVEDHLTRLRRDLQ
EVMRKKESLSHGVTYLPHLNVMPVPDSIDPDNWDDDLSQRLAASWEGNWKNWWEEKLGLN
QSKKIAALRKKRQRMKQAKARRRISLSGSFTSSVKYQGSDFCWSSAGSQFLDSNDEPLDG
SQSMDMEEWMSRSEMRKKSPIMLRRFLHDQSTVEEPGQSPVRSLLQSPLRRPDQDFLTSP
SKSQSSSRVERPISSTPSVAVGMDSGPRPSSLSLKKRKYLNSLPASQTSTQNSAPDDGFS
LSQVYLSSPTPSSKLSLSSQRVPQIRSSSQASQPKKKSRMGF
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaaatttcctgatcagctttatccacatctgtatctggatggtccgcctgaa
gaagaggcgaaacacaattatggaggctggggttcatacgagcgagtgcgcactgttggt
gccgggccgtgtgatgctgaacaaccgtggtcccctcctgtgtttgaaccccagcacgat
gtgaacagtgaggaatggctgccggtcaaaccagccgtcgcccctttaatgccaccatat
gaagatgccaaagtcccatctattgatctaccagatccaatgaattttccagatcatatg
cactatttctaccagcattactttatggatgccttctccacaatgggacatttgctccag
gatgacttcactttccaacgtaaagcaccaaaggatgttttgtcaatgcgctggtctaga
gactttataaatggcttaaaatataagaggtgcgagtatgcaaatttctcgaagaagatc
cgtcgtatgcaccatcttctcagggatattgtgagcgatgttcctccgtctctcctttcc
tcgctcctctatgaagagctgacgactcagagggaacggctgcagttcagtgcagaaaat
acagggggcactctaggatttgtgcccttgcgtgataaccagagcagcagagtggcctct
ctgatctatcccaggggagtcgggatggacaaagtctttttccacaaggtggtgcaacat
tttaatgacgacaagcctcctagttttgtcctgcaaccccaacctagtgtgttttatttg
aaaggctctatcagacagatcagtcctggcaaaatggaagaagaaggtcatgtggctgtg
cggtcagattatttatgtggcgtgtgggtactaggaagccgaacgaagccacggttagtg
gaagtcatcgagaccaaagatcccttctcctgcgtcaccggcagtccacacatgccaaat
gagtttgtggtggttaatgagcggggagcagcatatctttggaccgtgcgcagaggattg
cagaagttccgtgaggagagttccaacctgtacttcaatgccaagtcgtcatggcgatgg
tgcgagttctccagtcacccgagagtgatggtctatgctgacagaacaggggcggagctt
acagacatacggtgtcatgaaaatactcacacgttattccggattggaaagacaccaggt
tgtgtttcaggagagcgagtgataatagccaagtacctgagtaaaagccacgcccatcac
caccttattaatacccagtattccacttacatcatggatgagcgggttcccagtgttccc
atgctgaaatggaaccatatgatggaggctccgccaacatttgcctgcgatctgccagga
cagaccccaagccaaacctgcaaattgctgcttggttctcagaggacacaggaaatcatg
ctactgcagtacacgggtgggagggagcatgcctgtcagactcaaggacccattcagagg
ctttttaatcccaaagagtgtctgagccacctaaaccttcagctacctcacaagaaacac
atcgctcagaagagactgaacgtgcctgtttcaggttttgctgctgtacagtatgaggat
tacatgtccgttttccagctctcagagacaggagatgtcttttaccaaacattgaaacta
catgcagatcagaccacgactagcaaggacgtcccagaacaagctgtcagtgtggaacat
actggagaaactggagaaacccagaacagcgacagccaatcttctcagagcgactcagag
actgagggacgccagctctcagagactggaagcgtcatttcccaaacattggaactgcaa
agagctcagaccaggaccaacaaggacatcccaaaacaagctgtctgtgtggaacgtatt
gtagaaaatggagagcatgtgaattttaagtcccacgccaacagcgatgtccattcttct
cagagtgactcagaggctgagggacgccaagtgatgcttgatcatttggaagtaattgac
aacgttgatgttgatgacttaaatgcttcggataccgataaaggtatcagcaaagaccca
ttaagcagttctattggcaataacccaacttgctctaacagaccacccaacccaagcaag
gatcctgatcttcaggctgcctggaacgaatggttcaagcccatttttaaaaaagcatca
gcaaaaaaacgacactctcattttcgacgtttaagaacagacgatttaaatggcttaaaa
ggcaaaaagccatataaacgcgtggaagatcacttgactagattgaggagagaccttcaa
gaggtcatgaggaagaaagagtcgctctcgcatggggtcacttacctgcctcacctgaat
gtgatgccagttcctgattctattgatcctgacaattgggacgacgatctgagccagcgc
ttggctgcctcgtgggaaggcaattggaaaaattggtgggaggagaagctgggcttgaac
cagtccaagaaaattgctgctctccgtaaaaagcgtcagagaatgaagcaggccaaagct
cggcgtcgcatctcgctttctggaagcttcacctcgtctgttaaataccaaggaagtgac
ttttgttggtcatcggcggggagccagtttctggattctaatgacgagcctttggatgga
tctcaatccatggacatggaggagtggatgtctagatctgaaatgcgcaaaaagagcccc
atcatgctgagacggtttttacatgatcaatcgactgtggaagaaccagggcaatctcct
gtacgatctcttttacagtctcctctgagaaggcctgatcaagactttttgacatctccg
tcaaaatctcagtcttcctctcgggttgaacgaccaatctctagcaccccttctgtagca
gtagggatggattcaggacctcgtccatcatcactctccttgaaaaaacggaagtacctt
aattctcttcccgcttcccagacatctactcagaactctgcaccggatgatggattttct
ttgtctcaggtttacctttcttcgccaactccgtcgtccaagctctccttgtcttcccag
agagttccccaaatcagaagctcctcacaggcctctcagcctaaaaagaagtctcgaatg
ggcttctaa
DBGET
integrated database retrieval system
