Pimephales promelas (fathead minnow): 120469418
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Entry
120469418 CDS
T08155
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120469418 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120469418 (msh6)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120469418 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
120469418
NCBI-ProteinID:
XP_039514325
LinkDB
All DBs
Position
Unknown
AA seq
1360 aa
AA seq
DB search
MAKQISLFNFFTKSPPPAPKAKSNPSPVEADAVRRSNTSPKEQANINGKKTPAKPAKSQV
KAGHAKLFGEKANTAKERKQSCMFSAGTLVWAKMEGHPWWPCMVVPQPLSGQQMRGRGRD
QRLHVHFFDEPPTRGWVNTKYIREYQGSNSADAKSGGVFFSGKPVIRKAMELADAAMKQN
PEQRLKIPVCMDPSDEEDDVEDMEVEKSTLTDEETTEEEAEEKVKPSRRSSRAAAENGQK
SKRRRIVVASDSDDSGEEFNPEQATVSSDEEVVSSGAEEEESKQEPEPEPESPVKPVKRK
RPLEKPVKSQTPKRAPATSPSVTSNTKSRLSAFSAPDNFESQSTSANGTEGGSTVWDHEK
LDWLMDGKRKDAQRKRQSDKNYDPTTLYVPDDFLNRTTPGMRRWWQLKSEMFDTVLFYKV
GKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQTETP
DMMEARCKKMSRPTKFDRVVNREVCRIITRGTQTYSVLDGAPSETQSKYLLSIKEKSEED
SAGHCHIYGVCFIDTSVGRFHIGQFRDDRHCSRLRTLVAHYSPAQVVFEKGNPSTETLKI
FKAILASTLLEGLNAGSQFWDAQKTLKVLAEEDYFKESNDEKAASVLPPTLKAMTSECDA
LSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEMEQAGGASCFFAQ
THQKMVLDGVTLANLEIFQNGSTGGPEGTLLERLDTCCTPFGKRLLKQWLCAPLCNPSSI
GDRLDALEDLMGAPSQVTEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAVLYEEV
TYSKRKIADFLAALEGFKVMKEIVSIMKPVAEGFRSKLLRRVLLLKTENEDGLFPKLSPE
LKRWDKAFDHQKARTTGVITPKAGFDPEYDQALGGVKDCEKDLQEYLDRQKKRLGCKNLS
YWGTGRNRYQLEVPDSVSERSVPEEYEVRSTKKGWKRYSTKEIERLFSEMQSWEDKRDAA
LKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMSRYSQSGDGPMARPEMVLPGDGSQS
HPFLDLRASRHPCVTKTFFGDDFIPNDIFIACPSGEEEGQDNDKALAPCVLVTGPNMGGK
STLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASI
LLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEEHAQDP
AVRLGHMACMVENECEDPSQETITFLYKFICGACPKSYGFNAARLANIPEEVIQSGHKKA
REFERSTVSLRIFKKLWSLAEASSADREQFSALVQMIGSL
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcaaatttccctctttaatttcttcacaaagtcgcctccacccgcgccgaag
gccaaatccaacccttctccggtggaggcagatgcagtgaggagatccaacacctcacct
aaagaacaagccaacatcaacggcaagaaaacaccagcaaaaccggccaaatctcaagtt
aaagctggacacgcgaaactgttcggggagaaagcaaacactgcaaaggagagaaaacag
tcatgcatgtttagtgctggcacactggtatgggccaagatggaaggacatccctggtgg
ccctgtatggttgttcctcaacctctcagcggacagcagatgaggggccgtggccgagac
caaaggcttcacgttcactttttcgatgaaccaccaacccgaggctgggttaacactaaa
tacataagagagtaccaaggctctaatagcgcagatgccaaatcgggaggcgtgttcttc
agcggtaagcctgtgatacgtaaagcaatggagctggcagatgctgcaatgaagcagaat
cctgagcagagactgaagattcccgtgtgcatggatccctccgatgaagaggatgatgtt
gaggatatggaggttgagaaatcaactctaacagatgaggaaacgactgaggaagaggct
gaagaaaaggtgaaacccagccggcgttcatctcgtgccgcggctgaaaacggtcagaag
tcgaagcgtcggcgcatcgtggtggcatctgacagcgatgactccggtgaagagttcaat
cccgagcaagcaacagtaagcagtgacgaggaggtagtgagtagcggggctgaggaagaa
gaaagcaagcaggagcccgaaccagaaccagaaagcccggtgaaaccggtcaagcgcaaa
cgtcctttagagaagcccgttaaatcacagaccccaaaacgagcgcctgcaacttcacca
tccgtgacgtccaacaccaaatctcggctctctgctttctctgccccagacaacttcgaa
agtcagagtaccagtgcaaacggtacagagggaggatctactgtgtgggaccatgagaaa
ctcgactggttgatggacggcaagagaaaggatgcgcagcgtaaacgacaatctgataaa
aactacgaccccacgactctatatgttcccgatgatttcctgaacaggacaacgcctgga
atgcgccgctggtggcagctgaagtctgagatgttcgataccgttttgttctacaaagtc
ggaaagttctacgagctctaccatatggacgcggtgattggcgtcaacgaactcggcctt
accttcatgaagggcacttgggcccattcaggcttccccgagattggcttcgggcgcttc
tcagacgtcctcgtgcaaaagggctacaaagtggctcgtgtggaacagaccgagacccct
gatatgatggaggcacgatgcaagaaaatgtcgcgtcccaccaaattcgaccgcgtcgtc
aaccgagaggtttgccgaatcatcacgcgagggactcagacgtacagcgtgcttgacggc
gccccttctgaaactcaaagtaaatacctgttgagcattaaagagaagagcgaggaggac
agtgcaggccattgccacatctacggggtttgtttcattgacacgtcggtggggcgcttc
catatcggccaattccgggatgaccgccattgttcccgtttgcgtactctggttgcgcac
tattctcccgcccaggttgttttcgagaagggcaatccttcaaccgagacattgaaaatc
tttaaggccatcttggcctccactttactcgaaggcctcaatgctggttcgcagttttgg
gatgcccagaagaccttaaaggtccttgctgaggaagactactttaaagagagcaatgat
gaaaaggcggcatcagtgcttcctccaactctcaaagccatgacgtccgaatgtgacgct
ctaagtctcactccaaagacgggttatgaactcgctctttccgcccttggcggctgcatg
ttttacctcaagaaatgtctagtggaccaggagcttttttccatgggcaactttgaggag
tatgttcctgtcgatgtggagatggagcaggctgggggagcgtcttgtttttttgcccag
acccatcaaaaaatggttttggatggagtgacccttgctaaccttgagatctttcagaat
ggctcgaccggcggtcctgagggaaccctacttgagcgattggacacgtgttgcactccc
ttcggcaagaggttgttgaagcaatggctctgcgcccctctttgtaatccatcctccatt
ggggatcgtttagatgctctggaggacctgatgggcgctccatctcaagtgaccgaagtc
accgacctgctaaagaagcttccggatctcgaaaggctacttagcaagatccacagcatg
ggtactcctcttaaaggacaagaccacccggactcccgagccgtcctgtacgaggaggtc
acctacagcaaacgtaagatcgcagactttctcgctgcactcgagggttttaaagttatg
aaagaaatcgtgtcgatcatgaagcccgtcgccgaaggcttccgctcgaaactattgcgc
cgagtgttgctcctcaagacggaaaatgaagacgggctcttccccaaactttcgccagag
ctcaaacgttgggacaaagctttcgaccatcagaaagctcgaaccacaggtgtcataact
ccaaaagctggctttgatccggagtacgaccaagccctaggtggagttaaagattgtgag
aaagacctgcaggaatacctggaccgacagaagaagagattgggctgtaagaacctatcc
tactggggaacgggaaggaaccgctaccagctggaagtccccgacagtgtttccgagagg
agcgtgccggaggagtacgaggtgaggtccactaagaagggctggaagcgttactccacc
aaagagatcgagcggctgttttcagagatgcagagctgggaagacaaaagagacgcagcg
cttaaggactgcatgagaagactcttctacaatttcgacaagaattacaaagactggcag
accgccgttgagtgcatggctgtacttgatgtgctgttgagcatgtcccggtacagtcag
agcggagacgggcccatggcgagaccggagatggttcttccgggtgatgggtctcagtcg
caccccttcctggatctgagagcgtcccgtcacccttgtgtcaccaagaccttcttcggt
gatgacttcattcccaatgacatcttcatcgcttgccctagcggtgaagaagagggtcaa
gataatgataaagcacttgccccatgtgtgttagtcaccgggccaaacatgggaggcaag
tccaccttaatgagacagtgtggtctggtggtgatcttggcccagctgggctgttacgtt
cctgctgagagtttgcgtctcactcctgtggaccgagtgttcactcgtcttggcgcctct
gaccgtataatgtcaggtgaaagtacgttctttgtggagctcagcgagactgctagcata
cttttgcacgccaccaaccactccctcgtcctgctcgatgaactgggccgaggtacggcc
acgtatgacggcacagccatcgcgagcgcagtggtgaaggagctgtcggagaagatctgc
tgtcggaccctgttctccactcattaccactcgctggtggaggagcacgcccaggacccc
gccgtgagactcggacacatggcctgtatggtggagaatgaatgcgaggaccccagtcag
gagaccatcaccttcctctacaagttcatctgtggcgcgtgtcccaaaagttacggcttc
aacgcagcgcgcttggcaaacatcccggaggaagtcatccagtcgggccataagaaggcc
cgtgagtttgagaggagcaccgtgtctctcaggatattcaagaaactgtggtcattggct
gaagcctcgtcagctgatcgggagcagttctcagcgctggttcagatgatcggcagcctg
tga
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