Pimephales promelas (fathead minnow): 120469609
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Entry
120469609 CDS
T08155
Symbol
acana
Name
(RefSeq) LOW QUALITY PROTEIN: aggrecan core protein
KO
K06792
aggrecan 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pprm00535
]
120469609 (acana)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120469609 (acana)
04091 Lectins [BR:
pprm04091
]
120469609 (acana)
Proteoglycans [BR:
pprm00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
120469609 (acana)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
120469609 (acana)
Lectins [BR:
pprm04091
]
C-Type lectins
Lecticans
120469609 (acana)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
V-set
I-set
Motif
Other DBs
NCBI-GeneID:
120469609
NCBI-ProteinID:
XP_039514640
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MLSLLLLSMCFWVFSVTGSFDYVYTEPESSLSVSIPNELPLRPLMGDTLVLPCYFLDNTV
NDPGAPTNAPLSHRIKWSLVTKEKTTNILVASEGIVNIDKRYLDRVTMLGYPMTPTDASI
KITELHSNDSGVYRCEVMHAIEDSHDTVDVQVQGIVFHYRAITTRYTLTFEKAKAACIQN
NAVIASPEQLQAAYDEGFHQCDAGWLADQTVRYPIHDPREACYGDKYQFPGVRTYGVRDV
NETYDVYCFAEKMTGKVFHTTSPNKFTFEEAEAECTKLGANLATTGQLYLAWKGGMDVCN
AGWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPLPDSRYDAFCYSEMGEEGSG
LFPFEFEMTTEADLLRFDTFTETPKVFLKPTSTENELQGEVVTYKPAVTTSVEFPYTALN
ISQLPLSPPPSSTGVVMDIVEGVADKTDLGSDLSYLNGSEAIMSATGVVFHYRASSSRYA
FDFVEAQLACKSIGAVIASAQQLQAAYEAGYHRCDAGWLLDQTVRYPIVSPRDKCSGDME
HFPGVRSYGLRPAKELYDVYCYVDKLRGEVFHASSFEGFTYNEAVAYCQDQNATLASTGD
LYAAWKQGFDKCRPGWLLDRSVRYSINNPRQQCGGGMAGVHTVYMFPNQTGSPELHSKYD
AYCFKVDLALSPNKRVKEENIVNMTSLPDLLRPKSIPIITSIPVEPSGSGASGASSTYDL
LSSGSGNQPSGSSIASGDSSGTSGSDDTLSSGSGYQPSGSFVSSGDSSGASGTDDLLSSG
SGDLQSGSFSFSGDSSGASDTDNLLSSGSGGQPSGSFGSSGDSSGTSGTDDLLDSRSRDQ
PSGSFVSSGSGDLPIIFSESDTVLSGFGSASGKPEEAGKGVTEILTFPFDQSVDTSGSGS
GSGXGYGSEESGSTSDISSSSGESDESGDLSGISSGSGSSEESSGLSGFLSGIFPSGGSS
GISLIDGSGIIMVIXPTTIIEQELGGSHVDFSGSGHTSGXWMSSDISGMSGDISGMNDDN
SGMSGDISGISGVHSGSGSGLTFSGLKFLESGFIDLTEQSREQEASGLLFFGSGEGSGFT
SGGYTIESGERSGELVSGDITFFTNNGMMEIPNKPLQGMELGRGEVEYSGNVRLSSGSGD
DQNESTVNSXDAPSAVLLAQGPSGLYSDAAGSYSTPEGIISQLDAVTSAALSSTTQPASL
QGPSLTEAPDMNGEIPFLHNMG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgctgtccttgcttttgctgagcatgtgtttctgggtcttctccgtcacagggtctttc
gattacgtttacactgagcctgaaagctcactgagcgtcagcatacctaatgagcttccc
ctccggcctctgatgggtgacacattagttctgccctgctacttcctggacaacacagtc
aatgaccctggtgcccccaccaatgctccgttgtctcaccgaatcaaatggagcctggtc
accaaagaaaagaccacaaacattttagtggcttctgaagggatagtaaacattgacaaa
aggtatctggatagagtcaccatgctgggataccccatgacacccacagatgcatccatt
aagatcactgagctccattccaatgattcaggagtgtatcgctgtgaggtcatgcatgcg
atagaggatagtcatgatactgtggatgtccaagttcaaggtattgttttccactatcgt
gcaatcaccacacgatacacccttacttttgagaaggccaaggcagcatgtattcaaaac
aatgcagtgattgcctctccggagcaactccaagcagcttatgatgagggtttccatcag
tgtgatgctggctggctcgcagatcagaccgtcaggtaccctattcatgatcctcgtgag
gcttgctatggagacaagtaccaatttccaggagtaaggacatatggagtaagagatgtg
aatgagacatatgacgtgtactgctttgctgagaaaatgacaggaaaagtgttccacact
acttcccctaacaaatttacttttgaggaggcagaagctgagtgtacaaagctgggtgcc
aacttggccaccacaggacagctgtacctggcatggaagggtggtatggatgtttgtaat
gcaggctggttggcagaccggagtgtccgctaccccatcaacatcgcccgaccacagtgt
ggggggggactgttgggagtgcgtaccgtctatctgtttcccaatcagactggttaccca
ctcccagactcccgctatgatgctttttgctactctgaaatgggtgaggagggttcaggc
ttatttccatttgaattcgagatgaccacagaggctgatcttcttaggtttgacacattc
accgaaacccccaaggtctttttaaagcccacctccacagaaaatgaactacagggagaa
gttgtaacttataagcccgcagtaaccaccagtgttgagttcccatatactgcactaaat
atttcccagctgccgctttcaccacctcccagctctactggagtagttatggacattgtg
gaaggtgtcgctgacaagactgatcttggctcggatttatcctatctgaatggaagtgaa
gctatcatgtctgccacaggggtggtctttcattaccgtgcaagctccagtcgttatgcc
tttgactttgtggaggctcagctcgcttgtaagagcatcggggcagtcattgccagcgcc
cagcagctgcaggcagcctatgaggctggttaccatcgatgtgatgctggctggctctta
gatcagactgtcaggtatcccattgtgtctccacgtgacaaatgctctggcgatatggag
cattttcctggtgtgaggtcttatggactgcgtcctgccaaagaactctacgatgtgtac
tgctatgtggacaaactgaggggcgaagttttccatgcaagttcattcgagggattcact
tacaatgaagcagtggcttactgccaggaccagaatgctaccctggcctccacaggagac
ctgtatgctgcttggaagcagggctttgataagtgccgccctggctggcttcttgaccgc
agcgtacgttactccatcaataacccccggcagcagtgtggtggagggatggctggagtt
cacacagtttacatgtttcccaaccagacgggctctcctgaactgcactccaaatacgat
gcatattgcttcaaggtggatctggctctatctccgaataagagagtgaaagaggaaaat
atagtgaacatgacatccttgcctgatcttctcagacctaagagtatccctatcattact
tcaatccctgtggaaccgtctggatctggtgcatctggggccagcagcacctacgatctg
ttgagcagtgggagtgggaatcagccgagtgggtcatctattgcaagtggagactcctca
gggaccagtggctctgatgatactttgagtagtgggagcggttaccagccaagtgggtca
tttgtttcgagtggagactcttctggggccagtggcacggacgatctgttgagcagtggg
agcggggatctgcagagtggatcatttagtttcagcggagactcttctggggccagtgac
accgacaatctgttgagcagtgggagcggtggtcagccgagtggatcattcggttccagt
ggagactcttctgggaccagtggcactgacgatctgttagacagtaggagcagggatcag
ccaagtgggtcatttgtgtcaagtgggagcggggatctgccaataatcttttcagaaagt
gacacagttttatcaggatttggatcagcttcagggaaacccgaggaggctgggaaggga
gtcaccgagatcctcaccttccccttcgaccagagtgtggacacttctggatcaggatca
ggcagtggtncagggtatggctctgaagaaagtggatctacctcagacatttccagcagc
tcaggagaaagcgacgagagtggagatctttctggcatctcctcaggatcaggttccagt
gaggagtcctcaggactcagtggtttcctgtcaggaattttcccctctggaggatccagt
ggcatttcattaattgatggcagtggcatcatcatggttatannacccacaacaattata
gaacaagagttaggtggaagccatgtggatttcagcggatcaggacatacctcaggtnnc
tggatgagcagtgatatctctggaatgagcggtgatatctctgggatgaatgatgataac
tctggcatgagtggtgatatatctggaataagcggtgtccatagtggctctgggagtggt
ttaacattttctggtctaaaatttttggagtctggcttcattgatctcacagaacaatct
cgtgaacaggaagcttctgggcttttgttttttgggtctggtgagggaagtggatttaca
tctggaggctataccattgaatcaggagaaagatcaggggaattagttagcggggatatc
accttctttaccaataatggcatgatggaaatacccaacaagcccctccaaggaatggag
ctaggaaggggagaggtggagtatagtggcaacgtccggctgtcctcaggtagtggagat
gaccaaaatgaatccacggtgaactcangtgatgctccttcagctgtactacttgctcaa
gggccatcaggcctgtacagtgatgctgcagggtcttattcaacaccagagggaatcatc
agtcaacttgacgctgttacttctgcagctttgtcttctaccacacagcctgcctctttg
cagggtccatctctcaccgaagcacctgatatgaatggtgagattccttttttgcataat
atgggctga
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