Pimephales promelas (fathead minnow): 120470047
Help
Entry
120470047 CDS
T08155
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03030
DNA replication
pprm03410
Base excision repair
pprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120470047 (pole)
03410 Base excision repair
120470047 (pole)
03420 Nucleotide excision repair
120470047 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprm03032
]
120470047 (pole)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120470047 (pole)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120470047 (pole)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
120470047 (pole)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
120470047 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
120470047
NCBI-ProteinID:
XP_039515371
LinkDB
All DBs
Position
Unknown
AA seq
2285 aa
AA seq
DB search
MVLQNSGRYKSDRGGDQDNQQDDASAMSAVKRLERSQFTDGMDERFGFERMKEPGEKTGW
LINMHPTEILDDDKRMISCVDYYFIQEDGNRFKVALPFKPYFYIATKKNCEREVISFLSK
KFQGKVAKLEVVPKEDLDLPNHLVGLKRSYIKLYFNTVDDLVKVKREISPAVRKNREREK
SNDAYTSMLSSALVGGSVVTEDKDGSSKKMTEQLDNILDMREYDVPYHVRVSIDLKIHVA
HWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMID
GQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEASLIQRWFEHVHETKPNIFVT
YNGDFFDWPFVETRAAQHGLNMHQEIGFQKDNQGEYKASQAIHMDCLRWVKRDSYLPVGS
HNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLIQRVERTLRHAIEEEENIPLEQVTNFNEVCD
EIKRKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGA
NCQRKMSWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHVLNREEQARHEKK
RLGDYCRKAYKKVHLTRLEDRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSS
AQDKGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGAN
IITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVIKSTNEKKPKVTISYPGAMLNIMV
KEGFTNHQYQELVDPASLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLDEVYASVAKVADYWLDVLYSKA
SNMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEESVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAQKTLA
SGETPDMEDFGAPPRPLQPAILISTKRKRISQGENSQAESQEQELTQSWREILGPPPDMG
ATREEILVWLRYHKKKWELQIRQRKERRKRRRLIDGEAQPTGGGVIRDGPTTGLGSFLRR
TARSILDMPWQIVQIAETSHPGLYKLWAVIGSDLHCMKLNIPRVFYVNQRVPKQEEGATC
KKVNRILPRSSVVYYLYQYAVPEDMYQEHLNEINADLSAPDIEGVYETQVPLLFRALVQL
GCMCMVNKQVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALFG
LFIPSQRKASVFVLDTVRSNQMPNLSSVYGAERTALLEKTTEELLPPEKHQFEVRAENDI
KAVYRALQRILLNYKEERRGPTLIAVQSNWELRRLAAGMTVLEEFPVVPVHVIDEISYNV
LDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPQDISIFGSDLFLARHLRKHN
HLLWLSPTARPDLGGKEADDSRLVMESDERGSMEINSQGCYSTVCVELDIQSLAVNTILQ
SQHVNDMEGGASMGVSFDVIQHASLEEMMSGNQGANAVASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLGS
SVIYGNFNRLILCTKKRRIDDSIAYVEYITNSIHSKEIFHSLSITFSRCWEFLLWMDPAN
HGGVKGKLPSSLLYGEHGNEKKTKKDGAEGDGSEDEDEDEENQVEDEEQDGEEDVEDLIE
SNWNIMQYLPQTASCQKYFLMIISAYIAAVYHSMRQELRRNAPGATPIKRRGATQASQQP
TGDVSALPGLITFSQEYVSSELTQNFFTITQKIQKKVSSTRSVTLPSEMFPVLPGSHLPL
NNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFRDPCKSYVLPEVI
CHQCNFCRDLDLCKDPAVSQDGSVLPQWFCSNCQAQYDTESIEMALVEALQKKLMSYTLQ
DLECAKCKGVKEANMPLYCSCAGDFNLSFTTKSFSEQVEVFRNIAAHYNMSFLLETIDWV
LSMNA
NT seq
6858 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtgggcgatataaatcagaccgaggcggggatcaggacaaccag
caggatgatgcatctgctatgtccgctgtcaagcggctagagcgcagtcagttcactgat
gggatggacgagcgctttggcttcgagcggatgaaggagcctggtgagaaaacgggatgg
ctgatcaacatgcacccgactgagattctggatgatgacaagcggatgatcagttgtgtg
gactattacttcatacaggaagatggaaacagattcaaagttgctcttccttttaagccg
tatttctacatagccactaaaaagaactgtgaaagagaggttatctccttcctgtcaaag
aagttccaagggaaagtggcgaagcttgaagttgtcccaaaggaagatttggatctgcct
aatcacctggtgggcctgaagaggagctacatcaaactctattttaacactgtggatgac
cttgttaaagtgaaaagggagatctcgcctgctgtccgcaagaacagagagagagagaag
tccaatgacgcctacactagcatgttatccagtgctttggttggtgggagtgtagtgacg
gaggataaggatggctcatcgaagaagatgactgagcagcttgacaacattttggacatg
cgagaatatgacgtgccctatcacgtccgtgtttctattgacctgaagattcatgtggct
cactggtataatgtgcggtacagaggaagtgcctatcctcctgagattgtgcgcagggat
gatcttgtggaaagacctgaccctgtagtgttggcatttgatattgagaccactaaactc
cctctgaagtttcctgatgctgaaacagaccagatcatgatgatatcatacatgatagat
ggacagggcttcctgatcacaaacagagaaattgtctctgaggacattgaagactttgag
ttcacacctaaacctgaatacgagggccctttcactgtatttaatgaacctgatgaggcc
tctctcattcagagatggtttgaacacgtccatgagaccaagccgaacatttttgtcact
tacaacggagatttctttgactggccatttgttgagactagggcggcccaacatggcctg
aatatgcatcaggagatcggcttccagaaggacaatcagggagaatataaagccagccaa
gctattcacatggactgcctcaggtgggtaaagagagacagttacctgcctgtaggaagt
cataacctcaaggctgcagcaaaagctaagttaagttatgaccctgtagagctggaccca
gaggagatgtgccgtatggctactgaagaaccacagactctggccacctattcagtgtct
gacgctgtggccacatactacctttacatgaaatatgttcatcccttcatttttgccctc
tgcaccattattcccatggaacccgatgaggttttgcggaaaggctccggtaccctgtgt
gaagccttgctgatggttcaggccttccatgccaacattgtcttcccaaacaagcaggag
caggtctttaataaactcacagatgatggtcatgtactcgactccgagacttatgtgggc
ggccacgtcgaggctctggagtctggtgtgtttcgtagtgatataccctgtcgctttaaa
atgaatccagcagcatttgactttttgattcagagggtagagcgtactcttcgtcatgca
attgaggaagaggagaatattccccttgagcaggtcaccaactttaatgaggtgtgtgat
gagatcaaaaggaagctgatctctctgaaggaagtgcccaatagaattgagtgtcctctt
atttaccatctggatgtgggggctatgtaccccaacatcatcctcaccaacagactacag
ccctctgccatggtggacgaggcgacctgtgccgcctgtgattttaataaacctggtgca
aactgtcagcgcaagatgtcatggcagtggcgaggagagatcatgccggccagtaggagt
gagtttcaccgcatccagcaacaattggagtcagagaagtttccccctctctttccaaat
ggtccacctcgtgctttccatgtgctcaatagagaagaacaggctcgtcatgagaagaag
cgcttgggagactactgtagaaaagcctataagaaggttcacctgaccagactagaggat
agagtcactaccatttgccagagagagaactccttttatgttgacacggttcgagccttc
agagaccgtcgatatgagttcaaaggactccacaaggtgtggaagaagaagctgtcttca
gcgcaggataaaggggacgcagcagaggtgaagcgctgcaagaacatggagattctctat
gagtctctgcaactggcgcacaagtgtatcctcaactccttctacggatacgtcatgaga
aaaggagcacgatggtactcgatggagatggctgggattgtgtgttttactggtgccaac
atcatcacccaggctagagagctcattgagcagatcgggaggcctctggagttggacact
gatggtatctggtgtgttcttcccaacacctttcctgagaactttgtcataaaatccacc
aatgagaagaagccaaaggtgaccatcagttatccaggagccatgctcaatatcatggtc
aaggagggtttcacaaatcatcagtatcaagagctggtggaccctgcatctctaacatat
gagaccagagctgagaacagcatcttctttgaagtggatgggccgtacttggctatgatc
ctgcccgcctccaaagaagaaggaaagaagctaaagaagaggtatgccgtgtttaacgag
gatgggtctctggctgagctaaagggctttgaggtgaagaggagaggagaacttcaactc
attaagatcttccagtcatctgtgtttgaggccttcctgaaaggcacgactctagatgag
gtttatgcctctgtggctaaagtggccgactactggcttgatgtgctctacagcaaggcc
tctaacatgccagatgcagagttatttgagctgatttcagaaaaccgctcaatgtcccgt
aaactggaagattatggagaacagaaatccacctccatcagcacggccaaacgtcttgct
gagttccttggcgatcaaatggtgaaggacgctggcctcagctgtcgctatgtcatctct
cgcaaaccggagggctcgcccgtcactgagagggcaatccctctggccatttttcaggct
gaagagagtgttaaaaagcatttcctacgtaaatggctgaagatgcctagcctccatgac
cttgacattagatctattctggactggagttactacattgagcgattgggcagtgctata
cagaagatcatcactattcctgcagctctacaacaggtgaaaaacccagtacccagggta
cgacatccagactggctgcataagaagcttctggaaaagaatgacatctacaagcaaaag
aagattagtgagctctttaccagtgagggaaagagacaggtggcccaaaaaactctagca
tcaggtgagactcctgatatggaggatttcggagctcctccgcgcccgttgcaacctgcc
atactaatcagcacaaaaaggaagaggatatctcaaggagagaacagccaggccgagtct
caagagcaagaactcacacagtcttggagagaaatactggggccaccgccagacatgggt
gccacccgggaggaaattcttgtctggttgcgctaccacaagaaaaaatgggagctgcag
attcgccagaggaaggaacgaaggaaacggcgacgtttgattgatggagaagctcagccg
acagggggtggtgtaatccgtgatggaccgacaacaggtcttggcagcttcctgcggaga
accgcccgcagtattctagacatgccctggcaaattgtacagattgcagagaccagtcac
ccaggtctttataagttgtgggcggtcattggcagtgacttgcactgcatgaagctcaac
atcccacgagtgttttatgtcaatcagagagtgcctaagcaagaagagggagctacctgc
aaaaaggtgaaccggatacttccgcgttccagtgtggtgtattacctgtaccagtatgca
gttcctgaggacatgtaccaagaacacctcaatgagatcaatgcagatctctctgctcct
gatattgagggtgtctatgagacacaggttccgctgctgttccgggctctggtccagctg
ggctgcatgtgtatggtcaataaacaggtggtcagagacctggctggcagagaggctgat
acctttgacctggaacacctcgagatgagatccctggcccagttcagctacctcgagcca
ggcagtgtaaggcacatttacctgtaccatcacagtcagggccacaaggctctctttggc
ctctttataccgtctcaacgtaaagccagcgtctttgttcttgacacggtacgcagcaat
cagatgccgaacctgagttcagtgtatggagcggagcgcacagcactgctggagaagacc
acagaggagcttctgccacctgagaaacatcagtttgaagtccgtgctgaaaatgacatc
aaagccgtctaccgtgcactgcagcgcattctcctcaactataaggaggagcgccgtggt
cctaccctgatcgctgttcagtctaactgggagctgcggcgtctggctgccggcatgact
gtactggaggagttcccggtggtgccggttcacgttatagatgagataagctacaatgta
ctagactggcaacgacacggagctcgccgcatgatcaaacactacctgaacctggacagc
tgcctctcacaggcttttgatatggccaggtattatcacctgcccgtgggaaacctgcct
caggatatttccatatttggatctgatctatttcttgcacgtcatctgagaaagcacaac
cacctgttgtggctgtcacctacggcaaggccggaccttggggggaaagaggctgacgac
agcagactggtgatggagagtgatgagagaggctccatggagatcaacagccagggctgc
tactccacagtttgtgtggagttggatattcagagtttggcagtgaacaccattctgcag
tcccagcacgttaacgacatggaaggcggggccagcatgggcgtcagctttgatgtcatt
cagcatgcatctctggaggaaatgatgtcaggaaatcagggggctaacgcagtggccagc
tatgacgagacagcgctctgctccaacacattcaggatcctgaagagtatggttgttggt
tgggttcgagagatcacgcagtatcataacgtctacgctgataaccaggtgatgcatttt
tatcgatggttgcgatcgcccagttctctgctgtacgacccggccctgcaccgcacactc
ctcaacatgatgaagaagatcttcctacaacttgtggcagagtttaagcgcctgggatca
tctgttatctatggaaacttcaaccgtctcatcctctgcaccaagaaacgacgcattgac
gactccattgcatacgtggagtatatcactaacagtatccattcaaaagaaatcttccac
tctctgtccatcacattctcacgctgttgggagtttctgctgtggatggatcctgctaac
catggaggagtgaagggaaagctgccctctagccttctgtacggagagcacggcaatgaa
aagaagactaaaaaagatggagcagagggagatggaagtgaggatgaggacgaagatgaa
gaaaaccaagtggaggatgaggaacaggatggggaagaagatgttgaagacctgattgaa
agtaactggaacatcatgcagtaccttcctcagacggcatcctgtcagaaatactttctt
atgatcatttcagcctacattgcagctgtctatcacagcatgagacaagagcttcggcgg
aacgcccccggcgctactcccattaagagacgaggagcgacccaagcatcccagcagcca
actggggatgtcagtgcacttcctggtttgatcacgttctcccaggagtacgtgtcaagt
gaactgacacagaatttcttcaccatcactcagaagattcagaagaaagtgtcgagcact
cgcagtgttacactcccttctgagatgtttcctgttcttcctggttctcacttgcccctc
aataaccctgctctggagtttattaaatatgtctgccaggtgctctctctggacgccaac
attgtcaaccaggtgaacaaactgaagcgagatcttttgcgattggtggatgttggagaa
ttctcagaggacgcccagttccgtgacccctgcaagtcctacgtcctgccagaggtcatc
tgccaccaatgtaacttctgtcgtgaccttgacctctgcaaagaccctgcggtttcccag
gatggttcagttcttcctcagtggttctgttctaactgtcaggcccagtatgacacggag
tccatagaaatggccctggtggaggctctccagaagaaactcatgagttacaccctacaa
gacctggaatgtgccaaatgcaaaggagtgaaggaagcaaacatgccgctgtactgtagc
tgtgctggagatttcaacctcagcttcaccacaaagagcttctccgagcaggtggaagtg
ttccggaacattgccgcccactataatatgagcttcctgctagagaccattgactgggtc
cttagtatgaacgcatag
DBGET
integrated database retrieval system
