Pimephales promelas (fathead minnow): 120470273
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Entry
120470273 CDS
T08155
Symbol
whrnb
Name
(RefSeq) whirlin
KO
K21879
whirlin
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pprm03037
]
120470273 (whrnb)
Cilium and associated proteins [BR:
pprm03037
]
Primary cilia and associated proteins
USH complex and associated proteins
120470273 (whrnb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
120470273
NCBI-ProteinID:
XP_039515719
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MSTDLERASLKSGANSLGSGGRALSVNVKKLHNALNVLLNDYEREQFIHCLNIYHAKRNV
FDLVQTLKVILNTPNKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKTDLLTGSIKHECSE
DISSTNAHAGASPVHFLREYEQAGPSHGPVRAAPVFSTTVEGTAPVLMQEAPDEIRQVTL
KRSKSHEGLGFSIRGGSEHRVGIYVSLVEPGSSAEREGLRVGDQIMKVNNMVFDRVTHGE
AVKVLKGSKKLSMSVCSMGRIPGGYVTNHVYTWVDPQGRSVSPPPDLVDQRGAGGRHSDI
QQLGHTHIRNEDAEKKVNISLDDGRSLGLMIRGGAEYALGIYITGVDRGSAAEYSGLKVG
DQILEVNGRSFRSICHDEAVQILKNSSHMLMTIKDVGRLPHARTVVDETKWIPSAQIAES
SANSNTQSVQSVDVGAGSSGKSVCCKAVMPAGGVVRAGAWNSLEEQAFMLLTETERQTMG
YYIQEYQHAHIGVEPLAMALFELFNTHAKLSLLAEVRTLIAAQDLERFDGQVLQHEMEAW
RARHAGPGLLHPDSICVTHPEGHVPSVCQLTSAVPGYNKSECRLDGSLMPLQSLNSLPDV
ALDKVQPSSESPPSFKPPPPPIRHASPKSQTKRPSSKLSQTNLLFTVPCRRHQENHTHNH
SHSPCSTHNSPCTIHHTTSTCSVHHTPPPCSHHHSSPRSSSYNASPSSGPPCRDLVQFLM
SRHAAVLSPHPESPNRSREGTPIISPRSSPSLSPSLLMPAPPPCSPENLEGSPSQSCGAT
QNSPLHPEPETAEERLQPQLRGATLSQLSDSGQTLSEDSGVDIAEAGGLSKDSSPRPGKP
PFLQVICDARRAEGLAQASAKQMGVMEPMFVRVPKCASTLGIAVEGGANTRQPLPRIATI
QKGGSVHICGQLRVGQVILEVNGVSLKGMEHRDATRVIAEAFKTKDKDHVDFLIADFNSA
L
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggatctggagcgcgcttctctcaagtcgggcgcgaactcgctgggctccggt
ggccgcgcgctctccgttaacgtcaagaagttgcacaacgcgctcaacgtgctgctcaac
gactacgaaagggagcagttcatccactgcctcaacatttaccacgccaagcgcaatgta
ttcgatctcgtgcagactcttaaagtcattctcaacacacccaacaagcgccaactttta
cccatgctgcgcctggtcataccccggtcggaccagctgctgttcgaccagtacacgtcg
gaagggctttatctgaaaacggatctgctgacaggcagtatcaagcacgagtgctcggaa
gacatcagcagcacaaacgcgcatgcaggagcatctccggtgcactttctgcgcgagtac
gagcaggccggtcccagtcatggacctgtgcgcgcggctcctgttttcagcaccacagtt
gaggggacagcgccggtgctgatgcaggaagcgcctgatgaaatccgccaagttacgctg
aaaaggagcaagagccacgaagggctaggattcagcatacggggtgggtcagagcatcga
gttggcatctatgtatctttggtggagccgggatcatccgctgagagagaggggctgaga
gttggagaccagatcatgaaagtcaataacatggtgtttgaccgagttactcacggagag
gcagtcaaggtgttgaaaggttctaagaagctctccatgtcagtctgttctatggggcgg
atcccaggtggttatgtgaccaatcacgtgtatacatgggtggaccctcagggccgcagt
gtgtccccgcccccagacctggtggaccagcgtggcgctggaggaagacactcggacatc
cagcaacttggacacacacacatacgcaacgaggatgccgagaagaaggtgaacatctca
ctggatgacgggcgctctttgggtctgatgatccgtgggggtgctgagtatgctctgggc
atctatatcaccggagtggaccgagggtctgctgcagagtacagtggactaaaggtaggg
gatcagattctggaggtcaatggacgtagtttccggagcatttgtcacgatgaggccgtg
cagatcttgaagaattcaagccacatgctgatgaccataaaggacgtgggacggctgcct
catgcacgcactgtggtggatgagaccaaatggatccctagtgcacagattgctgagagc
tcggccaatagcaacacccaaagtgttcaatctgtagatgtcggcgcaggaagttcagga
aagtcagtctgttgtaaagctgttatgccagcgggtggagtggtacgcgcaggagcgtgg
aactcgctggaggaacaggcgttcatgcttctaacagagacagagagacagaccatgggc
tactacattcaagagtaccagcacgcacacatcggggtagagcctctggccatggccttg
tttgaactgtttaacacacatgccaagctgtccttgctggctgaggtgcggactctgatc
gctgcgcaggacctggagcgattcgacggacaggtgttacagcatgagatggaggcgtgg
agagctcggcacgccggcccgggccttctgcaccctgattctatctgcgtcacccatcca
gagggccacgttccttctgtttgccagctgacctctgcagtcccgggctacaacaagagt
gagtgcaggttggatgggagtttgatgccacttcagagtctaaattctcttcctgatgtt
gctctggataaggtgcagccgtcatctgagtcacccccctcgttcaagcctccccctcca
cctattcgacatgccagcccaaagagtcaaaccaaacgaccttcgtctaagctgtcccag
accaacctgctctttactgtcccctgtaggcggcaccaagaaaaccacacccacaatcac
tcgcactcaccctgctctactcacaactccccgtgtaccatccaccacaccacttccacc
tgctctgtccatcacactcctccaccctgctctcaccatcacagctctccacggtcatca
tcctataatgctagcccttcctccggaccgccgtgtagagatctggttcagtttctgatg
agcaggcatgcggcggtgctttccccgcacccggagtctccaaatcgttctcgagagggc
accccaataatctctccccgctcctctccatccctttcgccttcactgctaatgcctgca
ccgcctccctgtagcccagagaacctcgagggctccccatctcagagctgcggtgcgacc
caaaacagccctctacaccctgagccagagacggcagaggaaaggctccagccccagcta
cgaggagccaccctgtcccagctgtcagatagcggacagactctgagcgaggacagtgga
gtggatattgcagaggctggagggttaagtaaggacagcagcccgcggccaggcaaacct
cccttcttgcaggtcatatgtgacgcacgcagagcagaaggactcgcccaggcctccgca
aaacagatgggagtaatggagcctatgtttgtacgggtgcccaagtgtgccagtacactg
ggtattgctgttgaagggggtgccaacaccagacagcctctgccacgcattgcgaccata
cagaaggggggctctgtgcatatctgtgggcagttacgggtgggtcaggtgattcttgag
gtgaatggcgtgtcacttaaaggaatggagcaccgggatgcgactcgagtcattgcggag
gcttttaagaccaaagacaaagaccatgttgactttttgattgccgatttcaactctgct
ctgtag
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