Pimephales promelas (fathead minnow): 120470388
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Entry
120470388 CDS
T08155
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120470388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120470388
03036 Chromosome and associated proteins [BR:
pprm03036
]
120470388
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
120470388
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120470388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
120470388
NCBI-ProteinID:
XP_039515868
LinkDB
All DBs
Position
Unknown
AA seq
1408 aa
AA seq
DB search
MSTEVLRPRPVAGGGSKLGELIGKLHEYLSASTDDKNEPTLPGHWNGTSAKEYLEQQALV
QSTEEPSGPSEVGMLSSARSRRKPAVVTKHSGMNESDVSSESGTEDVMSVHSNDHDTNFL
PKGTAFVLPEPVFNEARDDFRGPEFRNRRVYKQHRDGDRRRGGYELERVNCTACGQQVNH
FQRDSVYRHPMLKVLICKSCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAFC
KKCVLRNLGRKELSTILEEERKWYCYVCSPEPLVELVLSCDSVLESLEQAQKRVSRTDPN
SVRGRANKGGRGASYLMGAGGGMVPSVGLYQRMQRFVDVTTSLSHSFKAVVQSEREEDGN
QEEKVERIGQLRMFRAVLDDLHAANSALQEALDHELTGPKRANRVALDNKSKGKRRPKKA
MSSRSPGLTKELVVKLTPVPVSPQPISSTFPSVHPSPDRQNMNIGVTDGTLEESGAKVEM
EKGMDMEGMTERDRHVENYCGNNEEKGEVEEEEEEEEEEEEEEEEDQTDPKSLSLSEENK
RSPRVKTTPRRRRTNTNPSAEHAGLAEDDSDSDEVPEVLLQTAAAMANSEEEGLVGSSWD
GEEVNQQVRKQRLFGLVKTTPPDRGSRKRNLKERSSSSSSSSSASSRRGSQDQGSAVRMT
RGRAHKVARMTGQSGSSSSEVGGQELESGPSSDSDDQRIKPLTEGVTLLGSGNFQQSSGD
EMDIQPGPSLSVEDDDLENRIARQILLAQIRANLSDSELDDSSDEQSESTRGEDEEKKKT
KSKSEASETTDEEDNDGSESSESKSGSRHRHRLLRHGLTLSEAEAKSQKQGEKKRSKREV
QDLGCVIVSSSDETVDSAQYEELSLSESEEIGSQSPTRDEKLQSASRTPDKTTAANDDVS
STTEESLRSTPRGRRQIRRLLEVGQLARETQSALKEEEERRKRLAEREKQRLERERRERE
EADPEVILVSERQATPLVLEQDEVTQKPMLQVHTGFLNKLKPHQREGVRFMWDCCCESVQ
SVKSSQGSGCILAHCMGLGKTFQVIVFLHTVLLCKELPLKTALVVCPLNTVLNWKSEFDQ
WQRGLRPNRLRVAELATVKSLAVRVELLNDWFENGGVIIMGYEVFRVLTNTDSAKYSKHK
ESFRSFLLDPGPDLVVCDEGHVLRNADSSISKAMRAIRTRRRIILTGTPLQNNLTEYHCM
VNFIKENLLGSLKEFRNRFINPIQNGQCADSTPADVRLMKNRSHVLHQMMTGFIQRRDYS
VLRSCLPPKREYVLSVRMTPLQCQLYKHYLQTYKGKGAGVNSLFQDLHVLSLIWTHPWCL
KLAQLCRNKGKVQEPAPVFTGLDAGLERDSVQPNGSERRDAMITGSWVMEREILIQSPQS
VGPNKSQMSQTHPQWKFLVGKLSGICRS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgtctactgaagtcttgagacccaggccggtggccggtggaggaagtaagttaggtgag
ctgattgggaagctccatgagtacctgtcggcatctacagatgataaaaatgaacctact
ttacctggacactggaatggaacttcggccaaagaatacctggagcagcaggctcttgtc
cagagcacagaggagcccagtggtccctcagaagtgggaatgttgtcgtcggctcgttca
agaaggaaaccggctgttgtcaccaaacacagcgggatgaacgagtcagacgtttcgtct
gagagtggaacagaggatgtgatgtctgtccactccaacgaccatgacactaactttcta
cccaaaggaacggcgtttgtgctgccagagccagtctttaatgaagctcgtgatgatttc
cgtggtccagaattccgcaatagacgtgtttacaagcagcacagagatggtgacagacgc
agaggaggatatgagctggagagggtaaactgcactgcgtgcggtcagcaggtgaatcat
ttccaacgtgactcagtctacaggcaccctatgcttaaagtgcttatctgtaagagttgc
tttaaatattatatgagtgatgacatcagcaaagattcagaggggatggacgagcaatgc
aggtggtgtgcagagggaggcagtctgattggctgtgattactgcagcaacgccttctgt
aagaaatgtgtcctgcgtaacctgggaaggaaggagctgtccaccattctggaggaggag
aggaagtggtactgttatgtgtgcagtcccgagccactggtggagctggtgttgtcctgt
gactctgttctagagagcttggagcaggctcaaaaacgagtctcccgtaccgacccaaac
tcggtcagggggagggcgaacaagggcggtcgtggtgcatcctatctgatgggggctgga
ggtggaatggtgccctctgtaggcctttatcagcgaatgcagcggtttgtagatgtcaca
acatctttgagtcattccttcaaggcagttgtccaaagtgaaagagaggaggatggaaac
caagaagagaaggtagagcgaattggacagttacggatgttccgcgctgtactggatgat
ctgcatgctgccaacagtgcattacaggaagccctggaccacgagctgactgggcccaaa
cgtgccaatagagttgctttagataataaatcaaaagggaagcgtagaccgaagaaggcc
atgtcatcacggagccctggactcactaaagagctggtggtcaaacttactcccgtacca
gtcagcccacagcccatcagcagcacttttccttctgttcatccatcacctgacagacaa
aacatgaacattggagtgactgatggaacactggaagaaagtggagcaaaggtggagatg
gagaaagggatggacatggagggaatgactgagagagatcgacacgtggagaattattgt
ggtaataatgaagagaaaggggaggtggaggaggaagaggaggaagaggaagaagaagag
gaggaggaggaggaagatcaaactgacccaaaaagtttgtctttatcagaggagaataaa
cgttctccacgtgtaaaaaccacaccgcgccgtcggcggacaaacacaaacccctctgcc
gagcatgctggtttagctgaggatgactcagattctgatgaggtgcctgaagtgctgctc
cagaccgctgctgccatggctaatagtgaggaagagggtttggtaggtagcagttgggat
ggggaggaggtaaaccagcaagtcagaaagcagcgactctttgggctggtaaaaaccaca
cctcccgacagaggctctcgtaagcggaatctcaaggagaggtcttcatcgtcctcgtca
tcctcttctgcttcttcaaggaggggctcccaagaccaggggtctgcagtcagaatgacc
agaggaagagcccacaaagttgctaggatgacagggcagagtgggagttcatcaagtgag
gtgggaggacaggaactggagagtggtccgagcagcgactccgacgatcagaggatcaaa
ccgctgacagagggcgtcacgttgctgggctctggaaatttccagcagtcttccggtgat
gagatggacatccagccaggtccgtctttgtctgtggaggacgatgatttagaaaataga
attgcgaggcagattctgctggctcagatcagagctaacctctcagattctgagctggac
gacagctcagatgaacaatcagagagcacgagaggagaggatgaggagaagaagaagacg
aagagcaagagcgaagcatctgagaccactgacgaggaagacaatgatggctcagagtcc
agtgagtcaaagtcagggtcacgccaccgccaccgattgctgcgacatggtcttacctta
tcagaggcagaagcaaaaagtcaaaagcaaggggagaagaagaggagtaaaagagaagtc
caagatttaggatgcgttattgtgagcagcagtgatgaaacagttgactctgcccaatat
gaagaactcagcctttcagagtctgaggaaatagggtcccagtcgcccactcgtgatgag
aagcttcagagtgcatcacgcacacctgacaagaccaccgctgctaatgatgatgtatct
tcaactaccgaggaaagtttgaggagcacccctcgagggagaaggcagatcagacggctt
ctcgaggtgggtcagctggcccgggagacacagagcgctctgaaagaagaggaagagcgc
aggaagagattagcagagagagaaaaacaaagactggaacgtgagaggagagaacgggaa
gaagcagacccagaggtcatcttagtttctgagagacaggccacaccattggtccttgag
caagatgaagtaacgcaaaagcctatgttgcaagtgcacacgggctttctgaataaactt
aaaccacaccagcgagagggtgttcggttcatgtgggactgctgttgtgagtctgttcag
agtgtgaagtcgtctcaaggctccggctgtattctggctcattgcatgggtctgggcaag
acctttcaggtcatcgtgttccttcacacagtgctgttatgtaaggagttgccattgaag
acggctctcgtggtgtgtcctctcaacacagtgctgaactggaagagtgagtttgaccag
tggcagaggggcttaagaccaaacagactgagggtggcagagcttgctacggtaaagtct
ttggctgttcgtgttgagctgttaaatgactggtttgagaacggtggcgtgataatcatg
ggttatgaggtttttcgtgttctgacgaacaccgatagcgcaaaatacagcaaacacaaa
gaaagcttccgctcatttctactggatccaggccctgatctggtggtgtgtgatgagggt
catgtccttaggaacgcagactccagcatctcaaaagctatgcgagctatacgtacacgt
aggagaatcattttgacgggaacaccgcttcaaaacaacctcactgagtatcactgcatg
gtaaacttcattaaggagaacctgctgggttctctaaaggagttccgaaaccgttttatt
aatccaatacaaaacggccagtgcgcagactccacccctgctgatgtcagactgatgaag
aatagatcgcacgtcctccatcaaatgatgacaggattcatacagaggcgggactactca
gttttgaggtcttgtttgccgcccaagcgcgagtatgtgctgtcagtcaggatgacacct
ctgcagtgtcagttatacaaacactatctgcaaacctacaaagggaaaggagcaggtgtg
aacagtttgtttcaggatcttcatgttctgagtttgatttggactcatccctggtgtctt
aaacttgctcagctgtgcaggaataagggaaaagtgcaagagcctgctcccgtcttcaca
gggctggatgcaggtttggagagagattctgtacagccaaatggctctgaaaggagagat
gcaatgatcacaggttcttgggtgatggagagggaaatactgatccagtctcctcagtct
gtgggtccaaacaaaagccagatgtcacaaacacacccacagtggaaattcctggtgggg
aagctgagtggtatctgccgttcgtaa
DBGET
integrated database retrieval system
