Pimephales promelas (fathead minnow): 120470825
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Entry
120470825 CDS
T08155
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04136
Autophagy - other
pprm04140
Autophagy - animal
pprm04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120470825 (atg16l1)
04136 Autophagy - other
120470825 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120470825 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120470825 (atg16l1)
03029 Mitochondrial biogenesis [BR:
pprm03029
]
120470825 (atg16l1)
Membrane trafficking [BR:
pprm04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120470825 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
120470825 (atg16l1)
Mitochondrial biogenesis [BR:
pprm03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120470825 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
NBCH_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
WD40_RFWD3
Ge1_WD40
Beta-prop_HPS5
Beta-prop_WDR19_1st
KASH_CCD
Beta-prop_DCAF12
DUF6212
PUMA_CC
Bacillus_HBL
DUF7491
Beta-prop_Vps41
NET2A
GP57
Crescentin
PspA_IM30
Leu_zip
Fez1
Motif
Other DBs
NCBI-GeneID:
120470825
NCBI-ProteinID:
XP_039516410
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MAGRGVGCLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLERSDLQVVFSERLQTDKYEH
QNRHDLSPGVDGGRSDSLQQEMAQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMLEYQQQISRLEGECRDLRNTLADLERANQTLRDEYDALQITFSALEEKLRKT
TEDNQELVTRWMAEKAQEANRLNAENEKDTRRRQAKLQKELADAAKEPLPIDQDDDIEVL
SEDAGKATGETSPSRQLSRTPSKRVSQQPPPPPPGLLDSITNIFGLSDSVQPGFVPSDSR
RRRSVNSFSSSPEAAEAQAVCADVRVPSTAIHIFDAHDGEVNAVRFSPGSRLLATGGMDR
RVKLWEVVSGRCEPKGALTGSNAGITSIEFDSAGTHLLAASNDFASRIWTVDDFRLRHTL
TGHSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMS
GHFDKKVRFWDIRAESIVNELELLGRVTSLDLNHDRTDLLTCSRDDLVKIIDLRCNAVRQ
TFNAQGFKCGSDFTRVTFSPDGSYVAAGSADGALYIWNVLTGKLDKTLDKGHSSAINAVS
WSPSGAYVASVEKGSKAVLWSDM
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgtggagtcgggtgtttgtggaaacgtcatgttgtagagcagctgaaacag
agagacagagttcagcgtcaggcctttgaggagatcatacaccagtataaccggttgttg
gagaggtctgatcttcaggttgtgttttctgaacgtctccagaccgacaagtatgagcat
cagaacagacacgacctcagtcctggcgttgacggtggccgcagtgactccctgcagcag
gaaatggctcagatgagaatcaaacatcaggaggagctgacggagctgcacaagaagcga
ggagagttggctcagaacgtgattgaactaaacaaccagattcagcagaaagacaaagag
atccagagtaatgaagccaagatgttggagtatcagcagcagatctcgcgtctggaaggg
gagtgtcgtgacctccgaaacactctggctgatttggaacgagccaatcagacgctgcga
gacgagtacgacgccctgcagatcacgttcagcgctctggaggagaaactacggaaaacc
acggaggacaatcaggagctggtgacgcgctggatggcggagaaagcccaggaggccaac
agactcaacgctgagaacgagaaggacaccaggcgcagacaggccaagctccaaaaggaa
ctggcggacgcagcgaaggaacctcttcccatagaccaagatgatgacatcgaagttctc
tcagaggatgctgggaaggcaacgggtgaaacgtcgccgagcagacagctcagtcgcaca
cccagtaaacgagtgtcccagcagcctcctcctcctcctcctggactgctggactccatc
actaatatcttcggcttgtctgattctgtccaacctggtttcgtcccgtctgactccaga
agacgtcgctcggtgaactcgttcagctcgtctcctgaggctgcagaagcgcaggcggtg
tgcgctgacgtccgagtcccctccactgcgatacacatcttcgacgcccatgatggggaa
gtgaacgcggtgaggttcagtcccggttcccgtctgctcgccacgggaggaatggatcgc
agggtgaaactctgggaggtcgtatccggccgatgtgaacccaaaggtgcgctgacggga
agtaatgctggaatcaccagtatagagtttgatagtgcgggaacgcatttactggccgct
tctaacgacttcgccagcagaatctggactgttgatgacttcagactgcggcacacactc
acaggtcacagcgggaaggttttatctgctcggtttctcctcgacaacgctcgaatcgtc
tccggcagttacgatcgaacgctcaagctctgggatttacgcagcaaagtctgcatgaag
acggtgtttgccggctctagctgtaatgacatcgtctgcacggagcagtgtgtgatgagc
ggacacttcgacaagaaagttcgtttctgggacatcagagcggagagtatcgtgaacgag
ttggagttgctgggacgcgttacgtctttggatctgaatcacgaccggaccgacctcctg
acctgctctcgggacgacctagtgaaaataatcgatctgcgctgtaatgcagtgcgacag
accttcaatgctcaaggattcaagtgcggctctgacttcaccagggtcacattcagtcct
gacgggagttacgtggcggccggttctgcagacggcgctctgtacatctggaacgttcta
acaggaaaactagacaaaactcttgataagggtcacagttctgccataaacgcggtgtcc
tggtctccgtcgggagcgtacgtggccagcgtggagaaaggcagcaaggccgtgctttgg
tctgacatgtga
DBGET
integrated database retrieval system
