Pimephales promelas (fathead minnow): 120470828
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Entry
120470828 CDS
T08155
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120470828 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
pprm04990
]
120470828 (lrfn1)
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
SALM family
120470828 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
pprm04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
120470828 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
fn3
Ig_2
ig
LRR_5
LRR_9
LRR_14
LRR_LRWD1
Ig_DSCAM-DSCAML_C
C2-set_3
LRRCT
Sp38
Motif
Other DBs
NCBI-GeneID:
120470828
NCBI-ProteinID:
XP_039516417
LinkDB
All DBs
Position
Unknown
AA seq
747 aa
AA seq
DB search
MERLVFYVLVFGALVKAQHCPGRCICQTISPTLTLLCAKTGLLFVPPSIDRKTVELRLTD
NFITAIRRKDFVNMTSLVHLTLSRNTISQITPHSFVGLKSLRALHMDGNRLTVITSDQLK
GLVNLRHLILGNNQIHHVEPTSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTTINTLTLD
HNLIDHVDVGTFTLLTKLVRLDMTSNRLQTLPPDTLFQHAQVLSDPKTSSSNKLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHQVTKPYV
MEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEVNMIPLPLFVNNTGHMREADPGLSDITTSTKSGSNDTKPQNKRVVVE
NLTANSAVIHWPSERHIPGIRMYQIQYNSTIDDTLVYRMIPSASKTFKINDLAAGREYEL
CVLAVYDDGITSLTATRVVGCVQFHTAAEAGHCRFVPSQFLGGTMIIIIGGIIVASVLVF
IIILMIRYKAYSGTDGAKAKAQPDTSVSMHSQTNGSRPARSGAKHRSEECPESPGGKDCK
ALVLLKMDETQEELKVDLPPMCSEKAAPASRRASVCGPPSDDTHTDSSLTGSTMSLCLIG
PGSGPGPAEPPRKGPLANMGLLPSELARTRHRFSFDGDYALFQSHSYPRRARTRRHKSTT
HLNTDASPPCSRRVTFSSTEWMLESTV
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctggtgttttatgtgctggtgttcggtgctctggtgaaggctcagcattgc
ccgggtcgctgcatctgtcagaccatctcgcccacgctcacgctcctctgtgccaagacc
ggcctgctgttcgtgccgccgtccatcgaccgcaagaccgtggagctccggctgaccgac
aacttcatcacggccatccgccggaaagacttcgtgaacatgacgagtctggtgcacctc
acgctgtcacgcaacaccatcagccagatcaccccgcactccttcgtgggtttgaagtcc
ctccgagcgttacacatggacggaaaccggctgacggtcatcaccagcgaccagctgaag
ggtttggtcaacctgagacacctcatcctgggcaacaatcagattcaccacgtcgagccg
acgtccttcgacgagttcgtgtccaccatcgaggacttggacttgtcctacaacaacctg
aggacgttaccctgggaggcgatcgcccggatgaccaccatcaacacgttaacgctggac
cacaatctgatcgaccacgtcgacgtcgggaccttcacgctcctcacgaagctggtgcgc
ctggacatgacatccaaccgtctccagacgctcccgccggacacgctgttccaacacgcg
caagtcctgtcggatcccaagacgtccagctccaacaagctagccgtgagtttcggcgga
aaccctctccactgtaactgcgagttgctctggttgcgccgcctgacgagagaggacgat
ctagagacctgtgcctctccggagcacctgatggacaagtatttctggtccattcaggaa
gaggagttcatctgcgagccgccgctcatcaccaaacaccaggtcaccaaaccctacgtc
atggagggtcaaggcgtcacgctgaagtgcaaggcgatgggcgaccccgatcccgctatc
cactggcgctttcccgacggaaagttggtgcataacaactcccgcacgatcctgtacgac
aacggcaccctagacatcctgatcaccacgctcaaagacagcggcgccttcaactgtgtc
gcctccaacgccgcgggaatcgccacggctgccgtcgaggtcaacatgatcccgctcccg
ctgttcgtcaacaacacgggtcacatgagggaggcggatccgggcctctccgacatcacc
acgtccaccaaatccggcagcaacgacaccaagccgcagaacaagagggttgtggtggaa
aacctgaccgccaactccgccgtgatccactggccctccgaacgccacatccccggcatc
cggatgtatcagatccagtataacagcaccatagacgacaccctggtgtacaggatgatt
ccctcggcgagtaagacgttcaagatcaacgatctggcggcgggtcgagagtacgagctg
tgtgtgttggcggtgtacgacgacggcatcacgtctctgacggccacgcgcgtggtgggg
tgtgttcagttccacacggcggcggaggcgggtcactgtcgcttcgtccccagtcagttc
ctcggcgggaccatgatcatcatcatcggcggcatcatcgtggcgtccgtgctcgtcttc
atcatcatcctcatgatccgatataaggcgtacagcggcaccgacggggccaaggccaaa
gcgcagccagacacgagtgtgagcatgcactcgcagacgaacgggagcagaccggcgcgg
tccggggcgaagcatcgcagcgaggagtgtcccgagtctcccggcgggaaggactgcaag
gcgctggttctcctgaagatggacgagactcaggaggagctgaaggtggacctcccgccg
atgtgctcggagaaagcggcgccggcgtcccgacgggcgagtgtgtgcgggccgccctcg
gacgacacgcacacggacagcagcctcacggggtccaccatgtccctgtgtctgatcggg
cccggatccggcccgggcccggccgaacccccgcggaagggcccgctagccaacatggga
ctcctacccagcgagctggcccggactcggcaccgcttctccttcgacggagactatgct
ctgttccagagccacagttacccgcgccgggctcgaacccggcggcacaagtccaccact
cacctgaacactgacgcgtcgccgccctgcagtcgcagggtcacgttcagcagcacagag
tggatgttggagagtacggtgtga
DBGET
integrated database retrieval system
