Pimephales promelas (fathead minnow): 120471155
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Entry
120471155 CDS
T08155
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pprm03037
]
120471155 (rp1l1a)
04812 Cytoskeleton proteins [BR:
pprm04812
]
120471155 (rp1l1a)
Cilium and associated proteins [BR:
pprm03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120471155 (rp1l1a)
Cytoskeleton proteins [BR:
pprm04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
120471155 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
120471155
NCBI-ProteinID:
XP_039516837
LinkDB
All DBs
Position
Unknown
AA seq
2472 aa
AA seq
DB search
MQRAAPGSFDADTLFQNEQFPHPPVSSFGSSVKLASPAKRITFYKSGDAQFKGVKMAIHK
RSFKCFDALLDDLSQKVPLPFGVRTITTPRGTHSIKHLEQFEDGGCYLCSDRRHVKPINI
EAAGKRPAVWHHHSHPHNTRRKPSRPEEPPSGHQQHHRHPKRIVLVKNNDPAIRRSIILS
RRTARSLRVFMDEISELMQCHVKKLYTLEGRKIDNIQSLMQCPSVLVCVGREPFRPLLME
SSKKLSDEKLPGMRTRSHSSICSEGHESKKNVNFGLETKKSIIHPRSDSSNRSTRFSLSS
EKSYQNGVCMTPGQSGCVSTCPYVKEATMNDDIEKRVLVNKDGSLSVEMKVRFRLFNDET
LQWSTEIKKSSKKVNDSGFVKDGDYLQAKAEYSDPDSISASEETDEAFATKVHQKHLEDS
LCQNCCNHCQEYDIWKNPMHKDPGACKSPSSSGSTHRVVTKKSSVDSTHTLSRSSGEYTE
HVVEKASCFQQTMEEGDTRVEYCAVSHCCNRSEVSSAGVMSKSKRSGEDCCESHIKSRCS
QTEPEISPTPHCAVIKVMEERPISAVSNSSKVLESLKEDQDDDYDELPPSISRVSHWSQS
DHLESDDQPSCVHCCGCQTLPRSYLSPRPPSKESSSVVHSLKLKKYKTTFAAPVEQDGMS
TTSPVSKVSSRSHPSHCGAITPSSVSSACQHSQTSCKSRDKTINPESNASDALEECDGDA
ENRSLSATSGVSRRSGRSAVCSCCCVNKTLTENPEGSEPEKGDSILLKSNKSAVSILNPN
EKCEPVNNTLEVEATMERSESALSKNSNTSSTSKTSKRSNCSAHEMCSVGKSVKYEHNET
ESVEERTKSAMSARSDLIISEREPTPALVLTENDEAGEKSQERAVSPMSAHSNLSAASKT
SHKSKSAHSEKTKTPRSCSPNDLEEVPSTLLNSQGDKSESAATQNHTTSNNHCEQDTEFL
EEVRSTSAMSNKSDRSSEHPSQTSEKTTRSVKSCCDLQDKATPKSIHSDIQSEPETEVTT
EERLCSSLSKRSKRSVKSNASSKSKSKERVNSAMSCRSCKSNQNYSENTVTSVPNYVTPD
ECADPQSESERATSTMSQTSEKSNACSERSVKSGTKSPAFQEVDNGKSMTQNALTVTTPL
PWTKRSPSPRSNHDTKIKTNSRATSGMSVSSNVSSQSQRSSKCNCHSSSSGNLRETNPEK
LKEDVKDESEESLSRKSKLSNKSLINNIKSSGKQCDEPLSPTSTASVSIGLGEEHKGDDF
DERSISGMSVTTEDGGHKIENVNGVDAKERPNTEVSVNSAISDRPKKSHHMNYKTPVQAL
SPVSAESIMSAELKKSKSGSQLNENNIRVPSTLSMSSVQSKTPSGVSQGSAKNTVTKGGD
SEALNNTNHAEITKTSSKHDQSETASGKATPASDCLHSKASEHSMKSKNGQSTRENDKRS
KCSSQCLEINGLNIKYNCENDRGMVKCLKPSSSERRSVKSDANSAVMSDISQNCISLPQE
MPNKKKTSVKHPDSSSNSVLSQALSAADLLREIIGNARPVSRGSKSVASSKNVDKVENKS
QKSSRSKHEEVSISLECDSKELMPSFLPNASPTEVVNDWLRKIPIEGHVYEMDGELTEYM
NLAQGDEDTSQTEKSIIKVEEPQEDQAGENYFQQETNDSCGEKAQLETHEMYPDPEALTK
QDCLQKHCHSSVQVMKVLLGPKLDRSSSLPEVSLAYGRKLSQSAQGLLDCLANLRLIDSD
SKNEKKRKYNEIMMILQSLWLQKPSEDEQKKQEHHFTEDEFNPRSSSGVDVSSGSTGSVK
GSMNGIVGKIETTHGTIPPIAEQEASVEIKDEEENSTAPACECLDPPNVLSDPVTPDIAE
RVQGSPVNTQLDDDKENGILHKEDVESSKKESDQTPQISSGNESNTMKSQENTSSGSPPS
VQRAPLLKRVSQDPDPVWVLNLLKKLENQFMLHYADAMAEFKVRWDLDDNEMLDTMISEL
KVEVHKRIQSSIHRELQKIQSRTGRGPRPPGNALSRESTVQTEQRRKRLRVMRNKSITMS
RDEDIYTASGTENSDQRSEDEYCPCDACMKKKMASRAVQQAQALSLAPVMMEFDLRKILQ
LKKDPVKPFELKLEEQRTTNLTEENNLEVVHEEVEDTNDVETPDGALNAVDGENINNVKY
VSSDSEKRETNGEGGEDEEEKEGEHVKEEVVNGDTEGKEEVEFVEEETEKGDTEEDGEEK
NCLKGDAANSENSDVGAEVEKEMEMTETGEETESGDNRAETETVEESTEDESAEDGSESN
KDNTPETTEGEKSDETPNEESASEKNAEGSQDGTAEEDGTSNTGQDEDQPERKGNVPKVK
TEVEVNGDTENEVDKCSSVEEDLKNDDQSDETVAVICESTLAKQVTRTSMESQPGSVENC
TNQTAQAKLKDLQSFMESVESQGDNMVVITKQPPFKESNGPGNLKNMCNGLTEWQVSPKI
SNRANKQKNTKD
NT seq
7419 nt
NT seq
+upstream
nt +downstream
nt
atgcagagggcggccccaggctccttcgacgccgataccctttttcagaatgaacagttt
cctcatcctccagtgtcgtcttttggctcaagcgtgaaattggccagcccagccaagaga
attaccttctacaagagtggcgacgctcagttcaaaggggtcaagatggccatccataaa
cgcagcttcaaatgctttgatgccttattggatgacctttcccaaaaggttcctctgcct
tttggtgtgcgtactatcacgacccccaggggcacccacagcattaaacatttagagcag
tttgaggatggaggctgttacttgtgctctgaccgtcgccacgtcaagccaatcaacata
gaagctgcagggaaaaggcccgcagtctggcaccaccacagccacccacataatactcgc
cggaagccctcccgacctgaggaacccccctcgggacatcagcagcaccaccggcatccc
aaaaggattgttctagtgaaaaacaatgaccctgctattaggcgatccatcattctgagc
agacgaactgctcgaagtcttcgcgtcttcatggacgagatttcagagctaatgcagtgt
cacgtcaagaaactctatactctggaggggcgcaagattgacaatattcagagtctgatg
cagtgtcctagtgtgctggtctgtgtgggtcgagaacccttcagaccattgcttatggaa
agctcgaagaagctctcagatgaaaagcttccaggaatgcgcacaaggtctcactctagt
atctgcagtgaaggtcatgaaagcaaaaagaatgttaactttggcctggagacaaagaaa
agcattatccatccaagatccgactccagtaatagatctacaagattctctctttcttca
gaaaagtcctatcagaatggagtatgcatgacaccaggacagtctggctgtgtcagcacc
tgtccttacgttaaagaagccacaatgaatgatgacattgagaagagagtgcttgttaac
aaagacggcagcctttctgtggagatgaaggttcgctttcggcttttcaatgacgagact
ctccagtggtctaccgagatcaagaagtcatcaaaaaaagtgaatgactctggctttgta
aaagatggcgattatcttcaagctaaagctgagtattcagacccagactccatctctgca
tctgaggagactgatgaagcctttgcaacaaaggtgcatcagaagcatctcgaggactcg
ctttgtcagaactgttgcaaccactgccaagagtacgacatctggaaaaaccccatgcac
aaagaccctggggcctgcaaatcacccagttccagtggatcaactcacagagttgtaacc
aaaaagtcatcggtggatagtacgcacacattgtctcgctccagtggggaatacactgag
catgtggtggaaaaggcctcatgctttcagcagacaatggaggaaggggacaccagagta
gaatactgtgctgtaagtcattgctgcaatcgaagtgaagtatcatctgctggagtcatg
tcaaagagcaagagatctggtgaggactgctgtgagagtcacattaaaagtagatgttct
caaacagaacctgaaatctctcctacgccacattgtgcggtcattaaagtcatggaagag
cgtccgatttctgcagtcagcaattcgtccaaagtgcttgagtctttgaaggaagatcag
gatgatgattatgatgagctgcctccaagcatctcaagagtgtcacactggtctcaaagt
gaccatcttgagagcgatgatcaacccagttgtgttcattgttgtggctgccagacttta
ccaagatcgtatttgtcccccagacctcccagtaaagaatcaagcagtgttgttcactca
ctgaagctcaaaaagtataaaaccacttttgcagcaccagtagagcaagacgggatgagt
acaacatctccagtttcaaaagtctcctccagatcccatccaagtcactgtggagccata
accccaagttcagtttcatctgcttgccagcacagccaaacatcttgtaaatctagagac
aaaacaatcaaccctgaatccaatgcatcagatgctctggaggaatgtgatggtgacgct
gaaaacagatctttgagtgccacttcaggtgtgtcaagaagatctggcaggtcagctgta
tgttcatgctgttgtgtgaataaaacactgactgagaatccagaggggagtgaaccagag
aaaggtgattccatattgttgaagtcaaacaaatctgctgtatccattttaaatcctaat
gaaaaatgtgaacctgttaataatacattggaagtggaagccacaatggaacgctctgag
tctgcactgtctaaaaattcaaatacctcttctacttcaaaaacctccaaaagatccaac
tgctctgctcatgaaatgtgttctgttgggaaatcagtgaaatatgaacataatgaaaca
gaaagtgttgaagaaagaaccaaaagtgccatgtcagccaggtcagacttaattatttca
gagagagagcccacaccagccttggtcctgacagaaaacgatgaagctggagaaaaaagc
caagaaagagctgtcagtccaatgtctgctcattcaaacttatcagctgcatcaaaaaca
tcccataaatcaaaatctgcacattcagagaaaactaaaacacctagatcttgtagtcca
aatgatttagaagaagtgccatcaacgttacttaattctcagggtgataaatcagaaagt
gctgctactcaaaatcatactacgtcaaataatcattgtgaacaagacacagagtttctt
gaagaagtgagatcaactagtgccatgtctaacaaatcagaccgatcttctgaacatcca
tcacaaacatcagagaaaacaactaggtctgtcaaatcttgttgcgacttacaagacaaa
gccactccgaagtccatccattccgatattcagagtgagccggaaactgaagtaaccaca
gaggaaagactatgcagttcactgtccaaacgctcaaaaaggtctgtaaagtcaaatgca
tcctcaaagtctaaatctaaggaaagagttaacagtgcaatgtcttgtaggtcctgcaaa
tcaaaccagaactattcagaaaacacagttacctcagtaccaaattatgtaacgcctgat
gaatgtgcagatccacaaagtgagtcagagagagcaaccagcacaatgtctcagacctca
gaaaagtctaatgcctgctctgaaagatccgtcaagtctggtacaaagagccctgccttc
caggaagtggataatggcaaaagcatgacacaaaatgccttaactgtgaccactccattg
ccttggacaaagaggtctccatctcctagatcaaaccatgacactaaaattaagaccaat
agccgagcaacaagtgggatgtcagtaagctctaatgtatcctcgcaatcccaaagatcc
agtaaatgtaattgtcacagctcctcaagtggtaatttgagagagacaaatcctgagaaa
ctaaaagaggatgtcaaagatgaatctgaagagagcttgtcaagaaaatcaaaactgtca
aataaatcccttatcaataacattaagtcttcaggcaaacagtgtgatgagcctctaagc
ccaacatcaacagcgtctgtttctatcggacttggagaagagcacaagggtgatgacttt
gatgaaagatcaatcagcggtatgtctgtcaccacagaggacggtggacataagatagag
aatgtaaatggagtggatgctaaggaaaggccaaatacagaagtttctgtgaattctgca
atttcagacagaccaaaaaagtcccatcacatgaactacaagactcctgttcaagccctc
tcgcctgtctcagctgaaagtattatgtcggcagaactgaagaaaagcaaatctggaagc
cagttaaatgaaaacaacatcagagtgccctccactttgtcaatgtcatctgtacaaagt
aaaacaccctccggagtttcacagggaagtgctaaaaatacagttacgaaaggaggagat
tctgaagctctcaacaacaccaaccatgcagaaattactaaaacatcctcaaaacatgac
caaagtgaaacagcatctggaaaagctacaccagcaagtgactgtttacattcaaaagca
tctgaacattcaatgaagtccaaaaatggccaaagtactagagagaatgacaaaagatct
aaatgttcttcccaatgtttggaaataaatggactgaacataaaatataactgtgaaaat
gataggggcatggttaagtgtcttaaaccctcctcatcagaaagaagatctgtgaaaagt
gatgcaaattctgcggtaatgtctgatatttcccaaaattgtataagcctaccacaagag
atgccaaacaagaaaaaaacatcggtcaagcatccagattcctcaagcaacagtgtttta
tctcaggcactttcagcagcagatttgttgagagaaattattggtaatgcaagaccagtg
agtagaggatcaaagtcagttgcctctagcaaaaatgttgacaaggtagaaaataaaagc
caaaaaagcagcaggagcaagcatgaggaagtcagcatctcattggagtgcgacagcaag
gaactgatgccgtcattcttaccgaacgcttcccctacagaagttgtgaatgactggctt
aggaagattcccattgaaggacatgtttatgaaatggatggcgaactcaccgaatatatg
aacctggctcaaggtgatgaggacacttctcaaactgaaaaaagcataattaaggttgaa
gaacctcaggaggatcaagcaggcgagaattattttcagcaggagaccaacgacagttgt
ggtgaaaaagcacaattggaaactcatgaaatgtatcctgaccctgaagcattaaccaaa
caagactgcttacaaaagcattgccattcttcggttcaggtcatgaaggttttactgggt
ccaaaactagacagatccagtagtttacctgaagtctcccttgcttatggcagaaaatta
agccagtctgctcaaggtctgttggactgccttgcaaatttacgattgattgactcagat
tctaaaaacgaaaagaaacgtaaatataatgaaatcatgatgatcctacagtcgctctgg
ctccaaaagccctctgaggatgaacagaaaaagcaggagcatcacttcaccgaggatgaa
tttaacccacggtcttcatctggggttgatgttagtagcggctccactggctctgttaaa
ggtagcatgaatggcatagtaggaaaaatagagaccactcatggcacaataccaccaatt
gccgaacaagaggcatcagtggaaattaaagatgaagaggaaaattctacagctcctgca
tgtgaatgtttagatccacccaacgttctctcggatccagtaactccagacattgcagag
cgagtacaggggagcccagtaaatacacaactggatgatgacaaagaaaatggcatatta
cacaaagaagatgttgaaagcagtaagaaagaatcagatcaaacaccacaaataagctct
gggaatgagagtaacacaatgaaatctcaagaaaatacaagctcaggaagtccaccgtct
gttcagagagctccgcttcttaaaagggtttcacaagacccagatcctgtttgggtactg
aacttgttaaaaaagctagaaaaccagttcatgttgcattatgcagatgccatggcagag
ttcaaagtgaggtgggatttggatgacaacgagatgctcgatacaatgatcagcgaactg
aaagtggaagtacacaaacggattcaatcgagtattcacagagaattgcaaaaaatccaa
agtcggacaggtaggggtccaagacctccgggaaatgctctatcaagagagtctacagtc
cagactgagcagcgacgcaagcgtcttcgggtcatgcgcaataagtccatcaccatgtca
agggatgaggacatttacactgcatctggaactgaaaacagtgatcaacgcagtgaggat
gaatactgtccatgcgatgcatgcatgaaaaagaaaatggcgtcaagggcagtccagcaa
gctcaggctttgagtttggctccagttatgatggagtttgatctgcggaaaattttacaa
ctgaaaaaggatccagtcaaaccttttgaattgaagctggaagaacaacgcacaaccaac
ttgactgaagaaaacaacttagaagtggttcatgaagaggtagaagatacgaatgatgtt
gagacgccagatggtgctctcaatgcagtagatggtgaaaacataaacaatgtaaaatat
gtatcttcagactctgagaaaagagaaacaaatggtgaaggtggtgaagatgaggaggag
aaagaaggagagcatgtgaaagaagaagtggtaaatggtgacactgaggggaaagaggaa
gtagagtttgttgaggaagagactgaaaaaggagatacagaagaggatggtgaggagaaa
aactgtcttaaaggagatgcagcaaattcagaaaacagtgatgtgggtgcagaggtggaa
aaagagatggagatgacagaaactggtgaggaaacggaatcaggtgacaatagagctgaa
actgagactgtggaagagagtacagaagacgagtctgcagaagatggtagtgaatcaaat
aaagataatactcctgaaactactgaaggtgaaaagtcagatgagacaccaaatgaagag
tctgccagtgagaagaatgctgaaggaagccaagatggaactgccgaggaagatgggaca
tcaaacacaggacaggacgaggaccagcctgagagaaaaggcaatgtgccaaaggtaaag
accgaggttgaggtcaacggagacacagaaaatgaagtggacaaatgtagctccgttgag
gaagatttaaaaaatgatgatcaatctgatgaaactgttgctgttatctgtgagagcaca
ctagcaaaacaggtaacgagaacgtcaatggaatctcaaccaggatccgtggagaattgc
acaaatcagacagcgcaagctaaactgaaagatcttcagagtttcatggagagtgttgaa
agtcaaggcgacaacatggttgtgattactaaacaaccacccttcaaagagtcaaatgga
ccaggaaacctaaagaacatgtgcaatggcttgaccgaatggcaagtgtcccctaaaata
agcaacagggccaataaacaaaaaaatacgaaggattga
DBGET
integrated database retrieval system
