Pimephales promelas (fathead minnow): 120471248
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Entry
120471248 CDS
T08155
Symbol
nup188
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120471248 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120471248 (nup188)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120471248 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
120471248
NCBI-ProteinID:
XP_039516969
LinkDB
All DBs
Position
Unknown
AA seq
1733 aa
AA seq
DB search
MADSEMCVRSSRELWTILLGRSALREPGQIEAELNRNWERLLQGLSFYKPPSTSAADKLK
ADKNTAQALKDFGLRISKLLGLDEQQSVQIFQCYLQEDYRGTRNTLKAVLQDERQSQALL
LKIADYYYEERLCVLRCVLHLLTYFQDERHPYRAEYSNCVSQLEKDLVSNYRKQFELLSK
LEAPTWETHGNLMTERQVSRWFVQCLKEQALLLEILFLYYAYFEMPPNDLSTFTRLFKEQ
GFGLRQTNRHLVDKSMDALVERIGYFSSLILVEGMDIDFLHKCALEDRTEQHQFYDQQDV
CKEMDQMLLTFGDISHHGPVLLAWVLLQHTLHPEEVSSVIRRLGHTTLQLGVFQYLTNTL
QALGNAGNNCTASTARMCIYGLLSFVITSFEEDTLGSQQHLINAACEVLVAPSLAELFWE
SKPNMGLGVILDSAVGVFPYKTGPLLQLLTALLSDKSTAKKVYTFLDKMSFYTEAYKDKP
NDVISREDGTLWRRQTHKLLYPLGVGQTNLRMPQGCFGQVCEVKPLSVGEQSVLVRWEYS
YSSWTLFTCEIEMLLHVVSTADVLAHCERVKPILDLVHKIISTDWTVSDCLLPLTSRIYM
LLQRLTSVINPPVDVITSCVNCLIALAARQPGKVWSSLHHTGFLPFASTPLTNMAQTMSA
EGMKAGNYGNLLVLIEQPRGEYSVTIAFLRLVTTLVKGQLGSTQSRGLIPCVLLVLKEML
PTYHKWRYNTYGVRETIGCLILELVHAILNLSQEGASEGSAPSLQSLCIFSLANTEAGQA
VVNIMGVGVDTINMVLAAQPSSGGSEGPGQVLIQTVKLAFSVTNNVIRLKPQSDTASPLE
QALTHHGGHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIR
DAFLTRLQSRTEDMRIKVTILEFLTVAVETQPGLIELFLNLEAKDGSDGAKEFSLGAWSC
LSVVLELLDSKQQGKYWCPPLLQRAALAFLHALWQDRRDSALSVLRTKEKFWENLTTPLF
GNLPPPSETTEPCVLESCAFVMKIIALEIYYVVSGVLDPSLKAALESFSSKRRYEFWSDY
VRDLVFVACDGEEEGLRSLSESQMLISAWRTFLILSTSHSEVMHLKDDTVRQKLFMDVLE
GTKAALLMSQSVFCLRLGSMMVTLLLILLKQWKSVLVSAPALLTPLSLMMESVLHAEQQL
MDRTKAKLLSALILALHIQGLNGGEITQLPQLLLCMCEMVQDEALALIDSTRHMIQRGDV
QEDSMETDSPHFQKDQRDSVCVLALHLSKELCRADEDGEQWLQVVRKLPVLPSVLSALEL
SLRSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEGPANGASQAFV
RKSQDAPSWPGVYRLSLSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRTVQSLA
CLDEADHTVGFLLQLSNFCKEWQFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLHHYLQV
KNGEGLPQGPHPQRAAQPASKEQVEGEREEAESKALQAVQCSLLKILSKTLATLQHFTPD
CCQILLDQSMDLAEYRTLFVLKFHHSLRLTPMWRPSFGTLMATINVALSMLGEIEKKKEP
VVSSEDTQALKSLLMFSMENCFYVLISQAVRCLKDPSVFPRDKQRLKQELSSELSTLLST
LFRFFRRGSPSSPASGLLPSPQTKPPAPGSKGTPEGQEPFIQLVQAFVRHVQR
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atggcggactcggagatgtgtgtcaggagcagccgagagttatggactatcttgctgggg
agatctgcactccgagaaccgggccaaattgaagctgaattgaatcggaactgggagaga
cttctgcagggtctgtccttctacaaaccacccagcacgtcggccgcagacaagctgaaa
gcagataaaaacacagcacaagctctcaaagactttggactcaggatcagcaaacttctc
ggtttggatgaacagcagagcgtgcagatttttcaatgttaccttcaggaggactacaga
ggcacacgaaacacactcaaggcggtgctgcaagatgagagacagagtcaagctctgctt
ctgaagatagcagattactactatgaagagagattgtgtgttctgcgctgcgttctccac
ctcctaacatacttccaggatgagagacatccatacagggcagagtactccaactgtgtt
agtcagctggagaaagatctggtgtccaattacaggaagcagtttgagttgctgtccaaa
ttagaagctccaacatgggagacgcatggaaacctgatgacggagaggcaggtgtcccgc
tggtttgtgcagtgtctaaaggagcaggcccttctgctggagatcttgttcctgtattat
gcatacttcgagatgccgcccaatgacctttccacattcacacggctgtttaaggagcaa
ggctttggactgcggcagactaatcgacaccttgtggacaagagcatggatgcactggtt
gaacgcattgggtattttagttctttgattcttgtggaggggatggatatcgacttcctg
cataaatgtgctctggaggaccgaaccgagcagcatcagttttatgaccaacaggatgtt
tgcaaggagatggatcagatgctgttgacttttggtgacatctctcaccacgggccggtt
ctgttggcgtgggttctgctgcaacacacactgcatccagaggaagtcagctctgtgatc
agacgtctaggtcacactacgcttcagctgggagtcttccagtacctcaccaacacgctg
caggcgctcggcaatgctggaaataattgtacggcgagcactgcacggatgtgtatttat
ggtctcctgtcttttgtcatcacctcgtttgaagaagacacactcggcagccaacagcac
ctgatcaatgcagcatgtgaagttcttgttgcaccgagtctggctgagcttttctgggag
tcgaagccgaacatgggcttgggtgtgattctggacagtgcagtgggcgtgtttccatac
aagactggacctttactacagctgctcactgcactgctgtctgacaaatctacagctaag
aaggtgtacaccttcttagataagatgtcattctacactgaagcctataaggacaaaccc
aacgacgtgatctccagagaggatggcactctgtggaggagacagactcacaaactcctg
taccctctgggggttgggcagaccaacctgcggatgcctcagggatgtttcggacaggtg
tgtgaagtaaaaccgctgtcagtgggtgaacagagcgtccttgtgcgctgggaatattcc
tacagctcatggactctcttcacatgtgagattgagatgctgctgcatgttgtctctact
gcagatgtgctggcacactgtgagagagtaaagcctatcttggatctggttcataagatc
atcagcactgattggacggtttctgactgtctgctgccgctcacatcacggatctatatg
cttctgcagaggttgacctcggttattaaccctccagtagatgtgattacttcttgcgtc
aactgccttattgctctggctgctcggcagcccgggaaggtttggtccagtctgcatcac
accggctttcttccgttcgcctccactcctctgactaacatggcacagaccatgagtgca
gagggcatgaaggcgggtaattatggcaacctgctggtgttgatagaacagcccagagga
gagtacagtgtaaccattgcctttttaagactggtgaccacactcgtcaagggtcagttg
ggcagtactcagagcagaggactcatcccatgtgtgctactggttctgaaggaaatgctg
cctacttatcataaatggcggtacaacacgtacggcgtgcgagagacaatcggatgtttg
attctagagctggttcatgctattctaaatctgagtcaggagggggcgtccgagggcagt
gcccccagtctgcagtcgttgtgtatctttagtctggccaacacagaggcaggacaggct
gtggtcaacatcatgggtgtgggagtggacacaatcaacatggtgctagcagcacagccc
agcagtggtggttcagagggacctggtcaagttctgatccagacagtgaagttggcgttc
tcagtcaccaacaatgtgatcagactcaaaccgcagtctgatacggcctcacctttggag
caagctctgacacatcacggtggtcatggcaataacctgattgcggtgttggcaaagtat
atttaccacaagcatgacccagcactgccacgacttgctatacagctgctgaagagactt
gccacggtggctcccatgtctgtgtacgcttgcctgggcagtgacgccgctgccatccgg
gatgcgtttttgacccgactgcagagcagaactgaagacatgcgtattaaagtcaccata
cttgagttcctcaccgtagctgtggaaacgcaacccggactcattgagctcttcctcaac
ctggaggccaaagatggcagcgatggggcaaaggagttttctctgggagcgtggagttgt
ttgtcggtggtgctggagttgttggactctaagcagcaggggaagtactggtgtcctcct
ctcctgcagagggcggcactggccttcctccatgcgctctggcaggacagacgggacagc
gctctctccgtgctcaggaccaaagaaaaattctgggaaaacctcacaactcctttattt
ggaaacttacctcccccatccgagaccaccgagccatgtgttctggagtcttgtgccttt
gtgatgaagataatcgcccttgagatctactatgttgtcagtggcgtgttggatccatcg
ctgaaagcggctctagagagtttcagcagtaagcgccgctatgagttctggtcagactat
gtgcgtgatctggtgtttgtggcgtgtgatggagaagaggagggtctgcgctctctgtct
gagtctcagatgctcatctctgcctggagaacgtttttaatactctccaccagtcattct
gaggtgatgcatctgaaggatgacactgtcaggcaaaagcttttcatggacgttttggaa
ggtaccaaagcagcactgctgatgtctcagtctgtgttctgtctccgtctgggctccatg
atggtcacactgctcctcatcctcctcaaacagtggaaaagtgtgttggtgtctgctcca
gctctactgacgcccttgtctttgatgatggagagcgttctgcacgctgaacaacagctc
atggaccgaaccaaagccaaactcctgtcagctctcatcttagctctacatatacaagga
ctcaacggaggagagattacccagcttccccagctgctgttgtgcatgtgtgagatggtt
caggacgaagccctggcgttgattgacagcacacgtcacatgatccagaggggtgacgtt
caggaggacagcatggagacagacagcccgcatttccagaaagaccagcgagactcagtg
tgtgtgttagctcttcatctctctaaagagttgtgtcgtgccgatgaggatggtgagcag
tggctgcaggtggtccggaagctgccagttctgccgtcggttctgagcgctctagaactg
agcctgcgttccaaacagaacctttacttcaccgaggcagcgcttcatctgctgctcaca
ctcgcgagaacaccgcagggggcggcagcagtggcaggtgccggagtgatccagagcatc
tgtcttcctctcctcagtgtgtatgagggtccagctaatggagcctctcaggcgtttgtg
cgtaagtctcaggacgctcccagctggcctggtgtgtacagattgagtttgtctctgatg
gaaagtctgctgaaaactctccgttacaacttcattaatgaggcgctcgactttgtgggc
gtgcaccaagagcgcatccttcagtgtctgaatgcggtgaggacggttcagtctctggcg
tgtctggatgaggccgatcacacggtgggcttcttgctccagctctccaacttctgcaag
gagtggcagttccacctgccgcagctgctgagagacgtgcaggtgaatctgtgctatctg
tgtcagacgtgtacgtacctccttcacagcaagaagatgctgcaccattacctgcaggtt
aagaatggggaggggcttcctcaggggccacacccccagcgtgccgctcagcccgcctct
aaagagcaggtggagggcgagagagaagaggcggagtctaaagccctgcaggcggtgcag
tgcagcctgttaaagatcctcagtaaaacactggccacgttacagcacttcacgcccgac
tgctgtcagatattactggaccagtctatggaccttgcggagtacaggactctgtttgtg
ttgaagtttcaccactccctgcgtttgactccgatgtggcggccgtcgtttggcactctg
atggccactattaatgtggcgctgagcatgctgggagagattgagaagaagaaagagccg
gttgtctcctctgaggacacacaagcactaaagtctttgctgatgttctccatggagaac
tgcttctacgtgttgatctctcaggctgtccgttgtctgaaggatccttcagtttttccc
cgagacaaacagagacttaaacaggagctcagctcagagctgagtacactattgtccaca
ttattccgttttttccgccgaggttccccttcctccccagcgagcgggctgcttccctca
ccacaaaccaaaccacccgcaccaggatccaagggcacgccggagggccaggagcccttc
atccagctggtccaagccttcgtccggcacgtccagcgctga
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integrated database retrieval system
