Pimephales promelas (fathead minnow): 120471255 Help Entry 120471255         CDS       T08155                                  Symbol setx Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism pprm  Pimephales promelas (fathead minnow) Brite KEGG Orthology (KO) [BR:pprm00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pprm03021]     120471255 (setx) Enzymes [BR:pprm01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      120471255 (setx)     5.6.2.5  RNA 5'-3' helicase      120471255 (setx) Transcription machinery [BR:pprm03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      120471255 (setx) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 UvrD-helicase Viral_helicase1 AAA_30 AAA_22 AAA_16 nSTAND3 UvrD_C_2 Helicase_RecD Peptidase_C92 Motif Other DBs NCBI-GeneID:  120471255 NCBI-ProteinID:  XP_039516975 LinkDB All DBs Position Unknown AA seq 2357 aa AA seqDB search MMEKCLWCTTALEADGDVAIVDMLRRYSLGKLSEGVMKSLNEDLSYCPECVVEYHRARDK VPDLRKRLWEMEKARLLSVLKFNLDKELGEDDLFIIEDDLAKPVSLISPAEFYESLRYPL FEVLKYPYLLCHRDLCDMVVKALCKLQDMNKSFTVFEKHQGTYLLLVHPNEQVRRWAIDA AKTMKSVDRDAYYDLQDIFFCMFYVIELGISLDVPDLDPESYAGGTIPMLPSHLYDSQNK KNYWLGICMLLTQLSAEAMDSLFMGQFNIPLCILNTMDKLKNEDNPASDPFWPALHCFMV ILDRLGSKIWGQVDPSMAFQTITGATSYDMEIRSIQQKTMGTMFKVEPEYDDNMVTCSQM VYDCYASKPNQASGSSSNSGICSNYVIYEDMQSLVKVLDSEMGQSMRVYGSTFLWFIPFV RSIMELPELNASFISEVIHYLCDKILANRHVLTGQTNMCDKVTEFFTRILIQIVELHSTE GRMGILTRCAPKWVEVIVMCIVLSDEPHGPPDKMGGIHSVSSTSYNLGMVGRLPASGGGI GAIVLGCMALIRLLLKEGIKTGSVPSASHFLNLLNKQLRGATNKRWNLKHSESIELQKCL KSVVRSMQEKTVAPTSVVPSPSTSSVEATTNTVISRKSMPTLQQQHEEQGPSRACGSSFI KEEPHLNYGDCFLDEEFCSGLENIIKAKKEPPAPVFISELRPSVELEHIKPDLDKLQEIR SKLNNQNLLKIEAITKKPGESLKPVHLASAKEKRGFQATEEDDSDDDEPLNVRRAQLRKS AQHKVESSDSEVYCRDVGKTHTMSTGNSKKIVESSTIVISDDEDSDHAEGLKDISWPVEK QCATKNKSTGHPDLPESPGRDYDDLSESQVFEFETQQYVASAWNDPAFDESVLTKKSDQT LKPQVEEDPHEASPSRSSDNGMIPDEACRQAEDETRQQPQSQEPADPGELSKASSNAESW DKFVQTKPKPLQVKSTKTIPSEKTDKSKPKKPVIIDALARKFRRHHLKRNFMSMDVEEPS STSSTTSSSSGVQPSSPSSSSGSSSYFSASTSRGTPAIVPPKKVRKAVEPESTAERLGLK KKERKAFDLSQRSLDCVAKLRCHGQKLQVEPQQKTRRASRTSKTSPQKRMVKGNKKLMGS QDFQFYKQSREKQQRPATGAVTTFAQKPAKTNQPGDVPLPKPTVTSNENGDFVPWFQPDP DQKQNNENTTSEFGDSKGDGIGSNRTIIESKYFQASEPADVNMEKEKATQAPKEDVDEEW MFLTQMGPTDMELCSQMEELEDENEELFLTQRDPVDMDLDSESESDFPEQPVSAHKPFQT NAPIPSTICKEKVADHLFLKPGLPPMKKAKPSTTKIYNPSSRSASLVLEMEKGAKPPPAA NVAKAKISRLPPALPPPKTLQPVTLQQFTKPFPSQQTPLPLSHGPRLVTSTKISSTLEPP SYKVYQRPETPVNRPAPTMNQSPKFDLSFLTRAILKWEYRMLENYKTFGSPSDLCQLPLK EVPVKFQSYLEYFNSLYPLLLINAFEEMASEWLREGRVKLNLKVLGIEYSNSTASASFTV GISQESDMKQLYPKEDDLVLLWLPNNRQAYAHDEPNFHEPHPHFGCVSRSIVSKNPGSMS TLSLTIQTLGNVSSVNAQPVLCEVIGSLVSIFREFRALCLLQNGPMLRPVLAPHVSYFTH TLNSPPDLDTSEYNRDQARAISCGVAMIERTQSCGLATMERTPKTPKFLLIHGPPGTGKS KTIGGLLYKLLSSGINSVASVGNLHAKTRRTRVLLCAPSNAAIDSLMKKVIVIFKEKCRN INAPQGNCGDINLVRLGNERTISKSLKPYSLDHQTKARAQRAQQTTGADVQTQKEHLDRA IDNLSQRCAKTPKDSIDYKNMMERKRQLLKEREGLSRQIKESRSRRQESQAFVLQNANVI CCTLSTSGSIVLENAFRRLGHEPFNCVIIDEASQAKETETLIPMLYRCPSIILVGDPNQL PPTVVSLKAKEFGYDQSLMARLCKNLHPSNPQHSPILLLSVQYRMHPEICEFPSKYIYNS ALKNECETAKKRCSFNWPFKPYKVFDVTDGREMKERDSFVNPKEVGLVLLLLKLLGEKQS VRVGVITPYNAQKQRILEAVRRSGINKQLQVEVDTVDGFQGREMDCVIVSCVRASSEMGS IGFVGNRQRMNVTITRAKFSLFILGHLRTLREQRDWGELIEDAGRREVIIKTMQRGFESD VKKILKRDPPTRSLSHPPAMQSSTVTSPVSPVQAPMEIEPAPRSSRDMSSVQPQQAMPRL IPLECLKDPRINERPTDPRFPERQPIRDPGQERRGLPAPHLQTHRVYSNDADSQSTGQSS RHSSKHRGSSPPRRYRR NT seq 7074 nt NT seq  +upstreamnt  +downstreamnt atgatggaaaagtgtctgtggtgcaccacggccctggaagcggatggagatgtggcaatc gtcgacatgttgcgacgctacagcttagggaagctgtctgagggtgtgatgaagtctttg aatgaagacctcagctactgcccggagtgtgtggtggagtatcatcgagccagagacaag gtccctgatttgcgcaagcgtttgtgggaaatggaaaaggctcgactcctgagtgtgttg aaatttaatctggacaaggagctgggagaggatgatctatttatcatcgaagatgatctt gcgaagccagtgtcgctgatctctcctgcagaattctacgaaagtctgcgctacccactt tttgaagttctgaagtatccgtacctgctttgccaccgtgatctgtgtgatatggtggta aaggccttatgcaagttgcaggatatgaataagtcctttactgtgtttgaaaagcatcaa ggaacatatctgcttcttgttcatcccaatgaacaggtgcggcgttgggcaatcgatgct gcaaaaactatgaagagtgtggaccgggacgcctactatgaccttcaagacatattcttt tgcatgttttatgtcattgagcttggaatatctttggatgttccagacttggatcctgag tcttacgcagggggcactataccaatgctgccgtctcacctctatgattcgcaaaataag aagaattactggctaggcatctgcatgttgctaacacagcttagtgctgaggcaatggac tctctgttcatgggacagtttaacatcccgctttgcatactcaacaccatggataagctg aaaaatgaggataacccagcttccgacccattctggccagccctccactgctttatggta attctggaccggcttggttctaagatctggggtcaggttgaccctagtatggctttccag accatcactggagcaaccagctatgatatggaaataagaagcatccagcaaaaaaccatg gggactatgtttaaagtagagcctgaatatgatgacaacatggtgacttgcagtcagatg gtgtacgactgttatgcctcaaaaccaaaccaagcatctggttcgtcatccaacagtggc atttgcagcaactatgtgatctatgaggatatgcagtctttggtcaaagtgcttgattct gagatgggccagagcatgcgtgtatatggaagcacttttctgtggttcattccatttgtc cgttccataatggaacttccagagctcaatgcctcctttatcagtgaagtcattcactat ctttgtgataagattctagctaatcgacatgtactgaccggacagacaaacatgtgcgat aaagtaaccgagttcttcacccgcatcctcattcaaattgttgagctacactccacggaa ggacgtatgggaatacttactcgctgtgccccaaagtgggttgaagtgattgtcatgtgc attgtcctatcggatgaaccacatggaccaccagacaagatgggtgggattcacagcgtc agttcaacctcgtacaatctggggatggtaggaagactgcctgcgtctggaggtggcatt ggtgccatagttctaggctgcatggcactgattcgactgctgctgaaagaaggcataaag acgggatctgtcccaagtgcaagccattttttgaatttacttaacaagcagctgcgtgga gctacaaacaaacgatggaatttaaaacattctgaatctatagagcttcaaaagtgttta aaatctgttgtccggtcgatgcaagaaaaaactgtcgctccaacctctgtggttccatca ccatctacatcatcggtggaggcaactacaaacactgtaatttccagaaaatcaatgcca accctgcaacaacaacatgaggaacagggtccgagcagagcctgtggctcctcatttatt aaagaggagccacatttgaattatggcgattgcttcttggatgaggagttctgcagcggt cttgagaacatcataaaggctaaaaaggaacctcctgcccccgtgttcatttcagagctg agaccttctgttgagttggaacatattaaaccagatctggataagctgcaggaaattcga tccaaattaaataaccagaatttgttaaagattgaagccattaccaaaaagcctggtgaa tctttaaaacctgttcatttggcatcggctaaggagaaacgtggttttcaagctactgag gaggatgattcagatgatgatgaacccctcaatgttagacgagcccaattgagaaaatct gctcaacacaaggttgagtccagtgactctgaagtttactgtagggatgttggaaaaacg cataccatgtccactggcaactcaaagaaaatcgtagagtccagtaccattgttatctct gatgatgaagattctgatcatgctgaaggactaaaagacatcagttggcctgttgaaaag caatgtgccacgaaaaataaatctacaggacatcctgatttgcctgagagtccagggcgt gattatgatgatctcagtgagtcacaagtgtttgagtttgagacccagcaatatgtggca tctgcctggaatgatccggcttttgatgaatcagtcttgactaagaaatcggaccagaca ctcaaaccacaggtggaagaagatcctcatgaagcatctccctcacggagttcagacaat ggcatgattccagatgaggcatgtcggcaagcagaagatgagaccagacaacagccacag tcacaagagccagcggatccaggtgaattgtccaaagcatccagtaatgcagaaagctgg gataaatttgtccaaaccaaaccaaaacctctgcaggttaaaagcacaaaaaccattcca tctgagaagacagacaagtccaagcctaaaaagccagtgataattgatgcccttgctcga aaattcagacgccaccacttgaaacgcaacttcatgtctatggacgttgaagaaccttcc tcgacctcatcaactacttcatcctcgtctggtgttcagccttcctctccatcctccagc tccggttcctcttcttatttttctgcttccacctcacggggcacccctgccattgttcct ccaaagaaggtgcgtaaagctgttgagccagaatcaacagcggagcgtttaggattgaaa aagaaggaaagaaaagcctttgatctttctcagcgttcactagattgtgtggctaaactg aggtgccatggccagaaattgcaggttgaaccacaacagaagacaaggcgagcgagtcgg accagtaagacctcaccgcagaaacgtatggtgaaaggcaacaagaaacttatgggatct caagattttcagttttacaagcaaagtcgtgagaaacaacagaggccagcaacaggagct gtcacaacatttgctcaaaaaccagcaaagacaaatcagccaggtgatgtacccttaccc aaacctacagttacaagcaatgagaatggtgattttgttccctggtttcaaccagatcct gatcagaagcagaataatgaaaatactacatcggaattcggggactctaaaggggatggg attggaagtaataggacaataatagagtccaagtactttcaagccagtgagccagctgat gtcaacatggaaaaagaaaaagccacccaggcacccaaagaggacgttgatgaagaatgg atgtttctcactcagatgggacccactgacatggaactgtgctctcaaatggaggagctt gaggatgaaaatgaagaactctttctgacccagagagatcctgtcgacatggaccttgat tcagaaagtgagtcagatttccccgagcagccagtgtcggcgcataaaccatttcagact aatgcccctattccgagcaccatctgtaaggaaaaagttgctgatcatttgttcttgaag cctggcctgccaccaatgaaaaaggccaaaccttctaccacaaaaatatacaaccccagc tcccgcagtgcctcgctagtccttgaaatggaaaaaggagctaagccgcctcctgctgct aatgttgctaaagcgaagatttcccgactgcccccagctttgccacctcccaaaacatta cagcctgtgactcttcaacaattcacaaagccatttccttcacaacaaactcctctgcct ctgagccatggtcccaggttggtcactagtactaaaataagctctactttagagccacca tcttacaaggtataccaaaggcctgagactccagttaacagaccagcacccacgatgaat caaagcccaaagtttgacctttcattcttgacccgcgctatccttaaatgggaatataga atgcttgagaattacaaaacttttgggagtccaagtgatctatgccaactgcctctgaag gaggtgccagttaagttccagagctacctggagtacttcaacagcttgtaccccctgctg ctaattaatgcatttgaagagatggctagtgaatggctcagagagggcagggtcaagctt aacctaaaggtcctgggtatagaatacagtaattccacagctagtgccagcttcacagtg ggcatttctcaggaaagtgacatgaagcaactgtacccaaaagaagatgaccttgtcctg ctttggctgccgaacaacagacaagcgtatgcccacgatgaaccaaatttccatgaacca catcctcattttggttgtgtgtcccgttccattgtttccaaaaatccaggttccatgtca accctaagcttgacaattcagacccttggtaatgtgtcttcggtgaatgcccaacctgtg ctttgtgaagttattggatctttggtcagcatattccgggagtttcgtgcactatgtttg ctgcaaaatggaccgatgttgcgtcctgttcttgctccacatgtgtcttatttcacacac actctgaacagcccaccggacctggacacatcagagtacaacagggaccaggcaagagcg atatcctgtggagttgccatgatcgaaagaacgcagtcctgtggtcttgccacgatggag agaacgccgaagaccccaaaatttctccttattcatggtcctccaggaactggaaagagt aaaaccattggtggcttgttgtacaaactactgtcttcgggtattaacagtgttgcttct gtggggaaccttcacgccaagactcgacggacacgtgttctactctgtgcaccctctaac gctgccatcgatagtctgatgaagaaagtcattgtgatctttaaagaaaaatgcagaaac atcaacgctcctcaaggcaactgtggtgacataaacctggtaagattgggaaatgaaaga accatctcgaaatcgctaaaaccttacagcctcgaccaccagactaaagctagagcacag cgagcccagcaaactacaggtgctgacgtacaaacgcagaaggagcatctggaccgggct attgacaatctctcccagcgatgtgcaaagacgccaaaggattcaattgattacaagaat atgatggagaggaagaggcagcttctgaaagagagagaaggattgagtcggcagattaaa gagagtcgcagtaggagacaagagagtcaagcatttgtgctgcagaatgctaatgtgatc tgctgcacgctcagcaccagcggaagtattgtcctcgagaatgccttccgtcgactcgga catgaaccatttaactgcgtcatcatcgatgaggctagtcaggctaaagaaactgagacg ctgattcccatgctttacagatgtccttccataatcctcgtcggtgatcccaaccagctt ccaccaaccgttgtctcgctgaaagccaaggagtttggctatgatcagtctcttatggca cggttatgcaaaaatcttcatccatcaaacccgcaacattctcccatcctcctcctcagc gtgcagtaccgcatgcaccctgagatctgtgaattcccctccaaatacatctacaacagt gctcttaagaatgagtgtgagactgccaagaaacgctgttccttcaactggcccttcaag ccctacaaagtgtttgacgtgacagatgggagagagatgaaggagagagattcatttgtt aaccccaaagaggtcggtttggtcttgctgctgttgaagctgctgggcgagaagcagtca gtgcgagtgggtgtcataacgccctacaacgcacagaaacaacggatactggaagccgtt aggagatcaggcatcaacaaacaacttcaggtggaagtagatactgtcgatggctttcag ggcagagaaatggactgcgtcattgtgtcttgtgtgagagccagcagtgaaatgggttcc atcgggtttgttggaaatcggcagaggatgaatgttaccattaccagagccaaatttagt ctcttcatactgggacatctacgcacactcagggaacaaagggactggggagagttgatt gaggacgctgggagacgggaagttataatcaaaaccatgcaaagaggttttgaaagtgat gtcaagaagattcttaaacgtgatccgccgactcgcagtctctctcatccccctgctatg caatcaagcactgtgacctcacctgtttcacctgttcaggctccgatggaaatagagcct gcgccacgatccagccgtgacatgagcagcgttcagccacagcaggctatgccacgtcta atacctttggagtgccttaaagacccacggataaatgaaaggcccacagacccacgcttt ccagagcggcagccaatcagagatccgggacaggagaggcggggcttaccagcgccacac ctccaaacacacagagtttattcaaatgacgctgactctcaaagtaccggccaatcttcc agacactcttcaaaacatcgcggttcctcaccgcctagacgataccggagataa

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