Pimephales promelas (fathead minnow): 120471346
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Entry
120471346 CDS
T08155
Symbol
sbno2a
Name
(RefSeq) protein strawberry notch homolog 2a isoform X1
KO
K26273
protein strawberry notch
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120471346 (sbno2a)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120471346 (sbno2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
120471346
NCBI-ProteinID:
XP_039517088
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MPILATSVVMDTEDYLHPEDPQLGSPKFSAPSPPLPSSMENQLYPSNSWAYSQQTQYNQH
YPMQSGRQLQPNPSSVNLDLSDIDFHDLVRNGDFSQDLPCIEELSNTSLFSSPSESLLEY
PDPSGFGTESLAQLPAEGTVAQMCWDTPGHSQRQQNLSAFPGRFDDFSAILSASVAGFKP
APPPPPEEEEEADEEETEELGHADTYAEYKPSKSTIGISHPDIVVETNTLSSVPPPDITY
TLSIPDSTINSGLLSALQLEAIIYACQQHEVILQNGQRAGFLIGDGAGVGKGRTVAGIIL
ENFLKGRKRALWFSVSNDLKYDAERDLKDIEALNIPVFALNKIKYGDTATSEGVLFATYS
ALIGESQAGGQHRTRLKQILDWCKPNFDGVIVFDECHKAKNATSTKMGKAVLDLQSKLPR
ARVVYASATGASEPKNMIYMSRLGIWGQGTPFKTFDDFLHAIEKRGVGAMEIVAMDMKVS
GMYIARQLSFSGVSFRIEEITLDEEFKLVYNKAARLWAEALELFTRAADTLGLASRKSLW
GQFWASHQRFFKYLCIAAKVRRLVELAQIEMQHGNCIVIGLQSTGEARTREVLDENDGHL
DRFVSAAEGVFQSLVQKHFPTQKPKREKSAASKRKRKPRGRTAKFPKHCVEVGGVIKISD
DSDTDSDELDSESNSSPESLQDNDDVIFVNQINGPAAKLEELKLRLLGKIAELGKELPLN
TLDELIDRFGGPEKVSEMTGRKGRVVRRPDGSVRYETRAEQGLTIDHVNVREKERFMTGE
KLIAIISEAASSGISLQADKRVQNRRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEY
IFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSQYNFENKYGTKALDKITKA
ILGHIDNKVPPPKGYPGGDMFFRDMKKGMIDVGIFCREPRLGLNTEKDCTLTKFLNRILG
LEVHQQNFLFQYFTDNFDYLINKDKKEGKYDMGILDLAPGNDEIHEETQEKFLTPGNPQE
GQVMLYKISVDRGMPWEEACSKAEKLSGEYEGFYLSNKLRGNQPCVLLAEQGRGRNLILY
KPNIGKQAHPENLDNLLLRYYKVTPDEAKDYWESQFEFSFSSCTHANWKGKCKQIEEGQE
CFLGMRLRQYHMLCGALLRVWKRVSDIVSDVTNSSILQIVRLKTKQNSKQVGIKIPENCV
SRVRAELSRMDEEVKKARRERERFANDQRIRQEMLAKMINARKLVTNPPHSLPNHLHYPQ
SRLPPAAEAVSEVLDLTISPCPSPDIKPPASELNGVSRNGATQFGRARPLAVPPETYNLE
ELISQEQQRHRQVPLNSNMRLSSAHAALTIPQQHVHTLKQNHSSFGVLTQQGGSHAQPSA
QYSALLSQLQRSHDKSFVLRLLNQMQQQTVTSAQPSHQNSQRMAHSSNSHVQLSKPHAQL
QPLQSAHERAPAANTDFSFDDLDFGYPSPDSQLKYPFTPQALPSSTPPPPHYSSSLFASA
PPNSSLSDSSSSSSHFTPSSSSSEQTHQLPNGHSSMDPLETLDHMIHGSSSDHRQSVIQF
KSVDWDAT
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgcccattcttgccacgtctgttgtcatggacacggaggactatctgcaccctgaggac
cctcagttggggagcccgaagttcagcgctcccagtcctcctctcccaagttccatggag
aatcagctgtatccgtctaactcatgggcgtattcacagcaaactcaatacaaccagcac
tatcctatgcaatctgggaggcagctccagccgaacccgtcctctgtgaatctggacctc
tcggacatagactttcatgaccttgtgcggaacggagacttctcccaggatttgccatgc
atagaggagctgtccaacacatcgctgttctcctcgccatctgaatctctgttggagtat
ccagacccttcaggatttggcactgaaagcctggcacagttacccgctgagggcaccgtg
gcacagatgtgctgggatacacctggacacagtcagagacagcagaacctgagtgcgttt
ccgggcaggtttgatgacttcagcgcgatcctgtccgcgtcagtggcgggatttaagccc
gctcctccaccgccacccgaggaagaggaggaggcggacgaggaagagacggaggagttg
gggcacgcggacacgtacgccgaatacaagccatcgaaatctactattggaatctctcac
cctgacatcgtagtggagaccaacacactgtccagcgttcctcctcctgacatcacctac
acactgtccatcccagacagcaccattaactctggcctgctctccgccctgcagctcgag
gccatcatctacgcctgccagcaacacgaggtgattcttcagaacggtcagcgagcgggt
tttctgatcggagacggggctggtgtcgggaagggacgcactgtggccggaatcatcctg
gagaactttttaaagggaaggaagagagcactatggttcagtgtgtctaatgatctgaag
tacgatgctgagagagatctcaaggacatagaagcgctcaacatccctgtgtttgcttta
aataagattaaatacggagatacggctacctcagagggcgttcttttcgccacatactca
gcgctgatcggagagagccaggccggcgggcagcaccgcaccagactcaaacagatcctg
gactggtgcaaacccaactttgatggggtcattgtgtttgacgagtgccataaggctaaa
aatgcgacttccaccaagatgggtaaagccgtcctggatttgcagagcaaactcccccgg
gcgagagtagtgtacgccagtgccacaggtgcttctgagccaaagaatatgatctacatg
agccgattggggatctgggggcaaggaacaccgttcaagacctttgacgacttcttgcat
gcaattgagaagaggggtgttggtgccatggagattgttgccatggatatgaaagtgagt
ggcatgtatattgctcggcagctgagcttttccggcgtgtccttccggatagaggagatt
acactggacgaggagttcaaactggtctacaacaaagcagctagactgtgggctgaggct
ctggagttgttcacccgagctgcagacacgctgggtctggcctcccggaagtctctctgg
ggtcagttctgggcgtcacaccagaggtttttcaagtacctctgcatcgccgctaaagtc
cgtcgcctggtcgagctcgctcaaattgagatgcaacacggcaactgcatcgtgattggc
ctgcagtccaccggagaggctcgtactcgagaggtcctggacgagaacgatggacacctg
gacagattcgtctccgctgctgagggtgttttccagtcattagtgcagaaacacttccca
acacagaaacccaaaagagagaaaagtgccgcaagcaagaggaaacgaaagcccagagga
cggactgcaaaatttccgaagcactgtgtggaagtgggcggggttattaaaatcagcgac
gactccgacaccgactcagatgagctcgacagcgaatcgaactcctcccctgaatcacta
caggacaatgatgatgtgattttcgtgaaccaaatcaacgggcctgctgctaaactagaa
gaactcaagctgaggctgctgggtaaaatagcagagctgggcaaagagctgccactcaac
actcttgacgagctgattgacaggtttggaggaccagagaaggtgtcagagatgacgggt
cgaaagggacgtgtggtgaggcgtcctgatggcagcgtgcgatatgagacccgagcggag
cagggcctgaccatcgaccatgtcaacgtcagagagaaagagcgcttcatgacaggagaa
aagctgatagccatcatctctgaagcggctagttcgggtatttctctacaggcggacaaa
cgtgtgcagaaccgcaggagaagagttcacatgaccttagagctgccgtggagcgcagac
cgcgccatccagcagttcggtcgaacacatcgctcaaatcaggttacggctcctgagtat
atcttcctcatctctgagctggctggagagagacgcttcgcctccatcgtggccaagaga
ttggagagcctgggggcgctgacacacggggaccgacgagccactgaatccagagatctg
agccagtacaacttcgagaacaaatatggcaccaaagcgttggataagatcactaaagcc
atcctcgggcacatcgacaacaaagtccctccaccaaagggctacccaggaggagacatg
ttcttcagggatatgaagaaaggcatgattgatgtggggatcttctgtagggagccgcgt
ctgggtctgaatacagagaaagactgcaccctcactaagtttctgaaccgtattttgggt
ttggaggtccatcagcagaactttctgttccagtacttcaccgataacttcgactacctg
atcaacaaggacaaaaaagaggggaaatatgacatggggatattggatcttgctcctggt
aatgatgagattcacgaggaaacgcaggagaagtttctaactccaggaaaccctcaggag
ggccaggtcatgctctataagatcagtgtggatcgtgggatgccctgggaagaggcctgc
agtaaagcggagaaactctctggagaatatgaagggttttacctctcaaacaagctgcgt
gggaaccagccgtgtgtcctgcttgcagaacagggtcgtggtcgaaacctcatcctgtat
aaacccaacatcggtaaacaggcccatcccgagaacctggacaacctcctcctgagatac
tacaaggtgacacctgatgaagcaaaggattattgggaaagtcaatttgagttctccttc
agcagctgcacccatgccaattggaagggtaagtgtaagcagatcgaggagggccaggag
tgttttctggggatgcgtctcaggcagtatcacatgctgtgtggagctttgctgagggtt
tggaaacgagtgtctgacatagtctcggacgtcaccaactccagcatcctgcagatcgta
cgactcaaaaccaaacagaacagcaaacaagttggtataaaaatcccagaaaactgtgta
tcccgcgtgcgcgccgagctctctcggatggacgaggaggtgaagaaagcgcggcgagag
agagagcgcttcgcaaacgaccagcgtattcgccaagagatgctagccaagatgatcaac
gcccgcaagctcgtcaccaaccctccccactccctcccgaaccaccttcactacccacaa
tcccgtctgccgcccgccgccgaagcggtcagcgaggtcctggatctgaccatcagcccc
tgcccttcgccggacatcaaaccacccgcgtcagagctaaacggcgtgtcccgaaacgga
gcgacgcaattcggaagagcgcgtccactcgcggttcctccagagacgtacaacctcgaa
gaactgatttcccaggagcagcagagacaccgacaagtgccgttgaactcgaacatgcgc
ttgtcatcggcgcatgcagcgttgaccatcccgcagcaacacgttcacacactaaagcag
aatcattcgtcgttcggggtgctgacgcagcaaggcggctcccacgcgcaaccgtccgcg
caatacagcgcgcttttatcgcagctgcagcgaagccacgataaatccttcgtgctgcgg
cttctcaatcaaatgcaacagcaaaccgtcacctcagcgcaaccgtcacaccagaacagt
caacgcatggcgcactcgtcaaactcgcacgtgcagctgtcaaaaccacacgcgcagttg
caacccctgcagtctgctcacgaaagagcgcccgctgcaaacactgactttagtttcgac
gatttggactttggttacccgtcgcccgactcgcaactcaagtacccgttcaccccacaa
gccctgccatcctcgactccgccccctcctcattactcctcctccctttttgcatcggct
cctccaaactcctccctctctgactcaagctcctcctcctcgcacttcactccgtcttct
tcttcatccgaacagacgcatcaattacccaatggacacagcagtatggaccccttggag
acactagatcacatgatccacggatcgtcctcggatcaccgacagtccgtcatccagttt
aaatcagtggactgggacgccacctag
DBGET
integrated database retrieval system
