Pimephales promelas (fathead minnow): 120471567
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Entry
120471567 CDS
T08155
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120471567 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120471567 (msh2)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120471567 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
120471567
NCBI-ProteinID:
XP_039517363
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All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPVKPDTTVRIFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVFKNTSKSSKDHDWQISFKA
SPGNLTQFEDILFGSGAGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFSTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLEAVIKYLELLSDGANFGSFKITTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSTLQDCYRVYQAVGQLPSLVLA
LERYCGKHQALLQAAFISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSE
LRENMDRLEKSMQAALSSAARELGLEAAKTVKLDSNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDTVVSFALVSHAAPVPYIRPKILEKGSGRLIVKAARHPCVEAQDDVAFIPNDVTFTRG
KKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISRGGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPAEGMSDE
AVKEELRKLKTEVISQNNSFINEIVSRSAKVKLTSV
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtctatggacagtgcatctgaacatggatttttg
aatttttatttttctatgcctgtgaaaccggacaccaccgtgagaatatttgatcgaaac
gattactatacggtacacggaaaagatgcggtttttgcagccaaggaggttttcaagacg
aacggagtcatcaaaaacctgggaacaggaaacaagaggttggagagtgtggtcctcagt
aagatgaactttgagtcatttgtgagggacctactgctggtcaggcagtaccgggtggaa
gttttcaagaataccagtaagagtagcaaagatcatgactggcagatatctttcaaggct
tctccaggaaacctgacccagtttgaggacatcttgtttggcagtggagcaggacctggg
gagggtgcagccggtgtcgtcggggttcgtcttggcaccggggctgatgggcagcgtgtt
gtcggtgttggctatgtagacagcacactcaggaaactcggtgtgtgtgaattcccagac
aatgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagatcttggaaagctcaaacaggtggtacagcgaggt
ggcattctgctcacagacaggaagaaatctgagttctcaaccaaagacattgtgcaggat
ctgaatcgcctactgaaggcccgcaagggagagacggtgtccagtgctgcccttccagag
atggagaaacagattgcaatgtcttgcttagaagcagtcatcaaatacctggagcttctc
tcagatggggccaatttcggttccttcaaaatcaccacgtttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggccctgaatctcttccagggttcctctgatgatgct
actggcacacactccttggcaggccttttaaacaaatgccgtacccctcaaggacagcgg
ttggtcaaccagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gaccttgtggagacttttgtggaagactctgagctgaggaaaagctgtcaagaagatctt
ctccggcgttttccagatctgaaccggatggcaaagaagttccagcgtcagagctctact
ttacaggactgttatcgggtctatcaagctgtggggcaactgccgagtctggtgctggca
ttggagagatactgtgggaaacatcaggccctcctgcaagcagcattcatctctcctctt
aatgacctcatctctgacttctcaaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgagcatcacgagttcctggtaaaaccctcatttgatcccacattgagtgaa
ctaagggagaacatggatcgtttggagaaatccatgcaggccgctttgagcagtgcggct
cgtgagcttgggctggaagcagccaagactgtgaagcttgattccaatgcacagatcggt
tactttttccgagtcacgtgcaaagaagaaaagagccttcgcaacaacaagaaattcaca
actttagatgttcagaagaacggagtgcgatttactaacagtaagctgagctccttgaat
gaagagtacactaaaagcagagaagagtatgaagaggctcagaacgccatcgttaaagag
atcatcagcatagccgccggctatgtggacccagtacagactctaaatgaggtcatagct
cagctggataccgtggtgagctttgccttggtgtcccacgctgccccagtgccttacatt
aggcccaaaatactagagaaaggatcggggagactcattgtgaaagcggcaagacatccc
tgtgttgaagcccaagatgatgtggcttttattcccaatgatgtcaccttcacaagggga
aagaagatgtttcatattatcacaggtccaaatatgggtggtaaatctacatacattcgc
caagtgggtgtgatcgtgctgatggcacagattggctgttttgtgccatgtgatgaggca
gagctgagcgtggtggactgtgtgctcgctcgagttggtgcgggggacagccaaatcaaa
ggagtgtccacctttatggctgagatgctggagacggctgctattcttcgatcggccaca
gaggattccctcatcattattgatgaattaggcaggggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgctacccgcctcaagtccttttgcctgttt
gccactcacttccatgagctgacggcgctggcacagcaggtgcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcacactcacaatgctctacaaggtgaaaaagggt
gtgtgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcacgggagaaggctttggagcttgaggagttccaggatatttctcgaggt
ggggaagaagctggacctgaagccaaaaaacgctgcctggagaaacaggagggggagaag
atcatcgaggctttcctggctaaggtgaaatcaatgcctgctgaaggcatgtctgacgag
gctgtcaaagaggagctgcgcaaactcaagacagaggtcatcagccaaaacaatagcttc
atcaatgagatagtgtcacgctctgccaaagtcaaactgacttcagtctga
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